miRNA display CGI


Results 21 - 40 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 3074 0.66 0.564708
Target:  5'- uCGCCGCGAcuGGCgGCG-GCCGaggaCCCguucggGCg -3'
miRNA:   3'- -GCGGCGCU--CCGaCGUgCGGC----GGGa-----CG- -5'
24593 5' -64.2 NC_005264.1 + 78508 0.66 0.564708
Target:  5'- aCGCgGUGAGGCcaguaaccauCGCGCCguGCCCggUGCa -3'
miRNA:   3'- -GCGgCGCUCCGac--------GUGCGG--CGGG--ACG- -5'
24593 5' -64.2 NC_005264.1 + 158993 0.66 0.563757
Target:  5'- gGCUGCGAGuCUGCG-GUCGUauuuccuCCUGCg -3'
miRNA:   3'- gCGGCGCUCcGACGUgCGGCG-------GGACG- -5'
24593 5' -64.2 NC_005264.1 + 39966 0.66 0.563757
Target:  5'- gGCUGCGAGuCUGCG-GUCGUauuuccuCCUGCg -3'
miRNA:   3'- gCGGCGCUCcGACGUgCGGCG-------GGACG- -5'
24593 5' -64.2 NC_005264.1 + 103815 0.66 0.561857
Target:  5'- gGaCCGCGGGGCuUGCgcucgauucgcugaGCGCCaagcuucuggGCCCgGCc -3'
miRNA:   3'- gC-GGCGCUCCG-ACG--------------UGCGG----------CGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 63642 0.66 0.55901
Target:  5'- gGCCGCgGAGGcCUGCgaggaccccacgucuACGCCGCgagugacguccCCcGCg -3'
miRNA:   3'- gCGGCG-CUCC-GACG---------------UGCGGCG-----------GGaCG- -5'
24593 5' -64.2 NC_005264.1 + 87168 0.66 0.55522
Target:  5'- gCGCCGCGGuuucGCgGUuuacccaaucugGCGaCGCCCUGCu -3'
miRNA:   3'- -GCGGCGCUc---CGaCG------------UGCgGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 41953 0.66 0.55522
Target:  5'- cCGCCGCGuGGUcaaaucuCGuuCCGCCCUGUc -3'
miRNA:   3'- -GCGGCGCuCCGacgu---GC--GGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 144780 0.66 0.55522
Target:  5'- cCGCgCGCccuGGCUcGCgGCGCCGCCgCUucGCg -3'
miRNA:   3'- -GCG-GCGcu-CCGA-CG-UGCGGCGG-GA--CG- -5'
24593 5' -64.2 NC_005264.1 + 6679 0.66 0.55522
Target:  5'- gCGCCagcaGCGAGGCcgagacgGC-CGCCucgcccucGUCCUGCc -3'
miRNA:   3'- -GCGG----CGCUCCGa------CGuGCGG--------CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 154638 0.66 0.55522
Target:  5'- gGCCGCGGGGCauaaUGCcagucACGCUGU--UGCu -3'
miRNA:   3'- gCGGCGCUCCG----ACG-----UGCGGCGggACG- -5'
24593 5' -64.2 NC_005264.1 + 76346 0.66 0.55522
Target:  5'- gGCCGCGcGGCgacUGCGCGCaggCGCgUUGg -3'
miRNA:   3'- gCGGCGCuCCG---ACGUGCG---GCGgGACg -5'
24593 5' -64.2 NC_005264.1 + 146260 0.66 0.55522
Target:  5'- gGCCG-GAGuCaugUGCGcCGCCGCCCcgGCg -3'
miRNA:   3'- gCGGCgCUCcG---ACGU-GCGGCGGGa-CG- -5'
24593 5' -64.2 NC_005264.1 + 125706 0.66 0.55522
Target:  5'- gCGCCagcaGCGAGGCcgagacgGC-CGCCucgcccucGUCCUGCc -3'
miRNA:   3'- -GCGG----CGCUCCGa------CGuGCGG--------CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 11296 0.66 0.55522
Target:  5'- gCGCCaGgGuaGGGCgucCACGCCGCCCa-- -3'
miRNA:   3'- -GCGG-CgC--UCCGac-GUGCGGCGGGacg -5'
24593 5' -64.2 NC_005264.1 + 67347 0.66 0.545779
Target:  5'- cCGCCGCGAagagGGCgGaaaACGUagCGCCC-GCg -3'
miRNA:   3'- -GCGGCGCU----CCGaCg--UGCG--GCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 5440 0.66 0.536391
Target:  5'- uCGCCGCucucgccggagGAGGUccuaaccGCccCGCCGCCCaGCa -3'
miRNA:   3'- -GCGGCG-----------CUCCGa------CGu-GCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 113091 0.66 0.536391
Target:  5'- aGCCGCGGGGUUGUGUGUCaugGUgCUGUa -3'
miRNA:   3'- gCGGCGCUCCGACGUGCGG---CGgGACG- -5'
24593 5' -64.2 NC_005264.1 + 151428 0.66 0.536391
Target:  5'- cCGCCGCGAcuuuGuGCUGgaACGCCacuccCUCUGCa -3'
miRNA:   3'- -GCGGCGCU----C-CGACg-UGCGGc----GGGACG- -5'
24593 5' -64.2 NC_005264.1 + 83711 0.66 0.536391
Target:  5'- -aCgGagaaGGGGCaagcGCACGCCGCCgUGCc -3'
miRNA:   3'- gcGgCg---CUCCGa---CGUGCGGCGGgACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.