miRNA display CGI


Results 41 - 60 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 32401 0.66 0.536391
Target:  5'- cCGCCGCGAcuuuGuGCUGgaACGCCacuccCUCUGCa -3'
miRNA:   3'- -GCGGCGCU----C-CGACg-UGCGGc----GGGACG- -5'
24593 5' -64.2 NC_005264.1 + 113091 0.66 0.536391
Target:  5'- aGCCGCGGGGUUGUGUGUCaugGUgCUGUa -3'
miRNA:   3'- gCGGCGCUCCGACGUGCGG---CGgGACG- -5'
24593 5' -64.2 NC_005264.1 + 79104 0.66 0.536391
Target:  5'- uGCCGCaGAGGgcaucuCUGC-CGCCGCguaCCUaGCc -3'
miRNA:   3'- gCGGCG-CUCC------GACGuGCGGCG---GGA-CG- -5'
24593 5' -64.2 NC_005264.1 + 5440 0.66 0.536391
Target:  5'- uCGCCGCucucgccggagGAGGUccuaaccGCccCGCCGCCCaGCa -3'
miRNA:   3'- -GCGGCG-----------CUCCGa------CGu-GCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 83711 0.66 0.536391
Target:  5'- -aCgGagaaGGGGCaagcGCACGCCGCCgUGCc -3'
miRNA:   3'- gcGgCg---CUCCGa---CGUGCGGCGGgACG- -5'
24593 5' -64.2 NC_005264.1 + 53202 0.66 0.535455
Target:  5'- gGCCGCGA-GUUGCaaccgucGCGCC-CCCcGCc -3'
miRNA:   3'- gCGGCGCUcCGACG-------UGCGGcGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 97261 0.66 0.527059
Target:  5'- gGCCGCcGGGCcuugGCAcgguaguggcCGCUGCCUcGCg -3'
miRNA:   3'- gCGGCGcUCCGa---CGU----------GCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 67470 0.66 0.527059
Target:  5'- aCGCCugGCaGuuuGGCgGCacGCGCCGCCCgucgGCc -3'
miRNA:   3'- -GCGG--CG-Cu--CCGaCG--UGCGGCGGGa---CG- -5'
24593 5' -64.2 NC_005264.1 + 93041 0.66 0.527059
Target:  5'- gCGCCgaauGCGu-GCUGCuGCGCUGCCaUGCg -3'
miRNA:   3'- -GCGG----CGCucCGACG-UGCGGCGGgACG- -5'
24593 5' -64.2 NC_005264.1 + 9338 0.66 0.527059
Target:  5'- cCGCCa-GGGGCgGC-CGCCGUuuUGCc -3'
miRNA:   3'- -GCGGcgCUCCGaCGuGCGGCGggACG- -5'
24593 5' -64.2 NC_005264.1 + 102738 0.66 0.527059
Target:  5'- aGUCGCGGcGUUGUggGCCGCCg-GCa -3'
miRNA:   3'- gCGGCGCUcCGACGugCGGCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 76304 0.66 0.527059
Target:  5'- gCGCgGgGGGGCUGCugGCUcauuCgCUGUa -3'
miRNA:   3'- -GCGgCgCUCCGACGugCGGc---GgGACG- -5'
24593 5' -64.2 NC_005264.1 + 141770 0.66 0.527059
Target:  5'- aCGCCGCGGaagaagauccuuGGCcuaCACGCC-CCUUGUa -3'
miRNA:   3'- -GCGGCGCU------------CCGac-GUGCGGcGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 1220 0.66 0.527059
Target:  5'- gGCUGCGGGGUUGCACaacaucCCGCacgGUg -3'
miRNA:   3'- gCGGCGCUCCGACGUGc-----GGCGggaCG- -5'
24593 5' -64.2 NC_005264.1 + 133706 0.66 0.527059
Target:  5'- cCGCCGCGcacuGGuGCUGccuCugGCCgacaGCCCUuGCg -3'
miRNA:   3'- -GCGGCGC----UC-CGAC---GugCGG----CGGGA-CG- -5'
24593 5' -64.2 NC_005264.1 + 138417 0.66 0.527059
Target:  5'- aGCgGCGAGaacguGCUuuGCGUCGCgCUGCu -3'
miRNA:   3'- gCGgCGCUC-----CGAcgUGCGGCGgGACG- -5'
24593 5' -64.2 NC_005264.1 + 120247 0.66 0.527059
Target:  5'- gGCUGCGGGGUUGCACaacaucCCGCacgGUg -3'
miRNA:   3'- gCGGCGCUCCGACGUGc-----GGCGggaCG- -5'
24593 5' -64.2 NC_005264.1 + 101067 0.66 0.527059
Target:  5'- uGCaCGCGGGGgccauuucuCU-CACGCCugGCCCUGUu -3'
miRNA:   3'- gCG-GCGCUCC---------GAcGUGCGG--CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 126758 0.66 0.52613
Target:  5'- gCGCCgaagagagggacaGCGAcGGCaGCACGuuGCUgaGCa -3'
miRNA:   3'- -GCGG-------------CGCU-CCGaCGUGCggCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 120504 0.66 0.524272
Target:  5'- gGCggggGCGAGGCccucauagacaaacUGCuuGCCggcaGCCCUGCg -3'
miRNA:   3'- gCGg---CGCUCCG--------------ACGugCGG----CGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.