miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 1220 0.66 0.527059
Target:  5'- gGCUGCGGGGUUGCACaacaucCCGCacgGUg -3'
miRNA:   3'- gCGGCGCUCCGACGUGc-----GGCGggaCG- -5'
24593 5' -64.2 NC_005264.1 + 1509 0.68 0.445446
Target:  5'- aCGCCGCu-GGCUGCGcCGUUuuuugggGCCCcGCg -3'
miRNA:   3'- -GCGGCGcuCCGACGU-GCGG-------CGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 3074 0.66 0.564708
Target:  5'- uCGCCGCGAcuGGCgGCG-GCCGaggaCCCguucggGCg -3'
miRNA:   3'- -GCGGCGCU--CCGaCGUgCGGC----GGGa-----CG- -5'
24593 5' -64.2 NC_005264.1 + 3621 0.67 0.49945
Target:  5'- gGCCGCGAgGGCggGCGCGCUGacauUCgucGCg -3'
miRNA:   3'- gCGGCGCU-CCGa-CGUGCGGCg---GGa--CG- -5'
24593 5' -64.2 NC_005264.1 + 3760 0.71 0.274254
Target:  5'- uGCCGcCGGGGCgcUGCGggcccuuggucgacCGCCGCCgauCUGCg -3'
miRNA:   3'- gCGGC-GCUCCG--ACGU--------------GCGGCGG---GACG- -5'
24593 5' -64.2 NC_005264.1 + 3808 0.71 0.288598
Target:  5'- uGuuGCGAGGaggugcuccCUGCGCGCgGagaCCUGCu -3'
miRNA:   3'- gCggCGCUCC---------GACGUGCGgCg--GGACG- -5'
24593 5' -64.2 NC_005264.1 + 3944 0.68 0.446305
Target:  5'- uGCCuucgGCG-GGUUGCuuGCCGgCCUGUu -3'
miRNA:   3'- gCGG----CGCuCCGACGugCGGCgGGACG- -5'
24593 5' -64.2 NC_005264.1 + 4608 0.68 0.429299
Target:  5'- gCGCCGCGGcGGCguagGCGCGUucucgaaaauCGCCggGCc -3'
miRNA:   3'- -GCGGCGCU-CCGa---CGUGCG----------GCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 5032 0.7 0.335853
Target:  5'- gGCCaCGAGGUuccgcgucgUGgGCGCCGCCUaGCu -3'
miRNA:   3'- gCGGcGCUCCG---------ACgUGCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 5210 0.69 0.379886
Target:  5'- aGCCGCGAacacguuGCUGUccauaauGCGCgagcaggaCGCCCUGCu -3'
miRNA:   3'- gCGGCGCUc------CGACG-------UGCG--------GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 5440 0.66 0.536391
Target:  5'- uCGCCGCucucgccggagGAGGUccuaaccGCccCGCCGCCCaGCa -3'
miRNA:   3'- -GCGGCG-----------CUCCGa------CGu-GCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 6679 0.66 0.55522
Target:  5'- gCGCCagcaGCGAGGCcgagacgGC-CGCCucgcccucGUCCUGCc -3'
miRNA:   3'- -GCGG----CGCUCCGa------CGuGCGG--------CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 7057 0.69 0.404521
Target:  5'- aGCgGCGAcGGCgccgGCcgGCGCCGUCgcgCUGCg -3'
miRNA:   3'- gCGgCGCU-CCGa---CG--UGCGGCGG---GACG- -5'
24593 5' -64.2 NC_005264.1 + 7861 0.68 0.454949
Target:  5'- aGCUGCGAGGCccccacGUuCGCUGCgcaUCUGCg -3'
miRNA:   3'- gCGGCGCUCCGa-----CGuGCGGCG---GGACG- -5'
24593 5' -64.2 NC_005264.1 + 7998 0.66 0.574238
Target:  5'- cCGCCauuGCGGGGCcgGCAgaGgCGCCC-GCc -3'
miRNA:   3'- -GCGG---CGCUCCGa-CGUg-CgGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 9338 0.66 0.527059
Target:  5'- cCGCCa-GGGGCgGC-CGCCGUuuUGCc -3'
miRNA:   3'- -GCGGcgCUCCGaCGuGCGGCGggACG- -5'
24593 5' -64.2 NC_005264.1 + 9697 0.68 0.429299
Target:  5'- gCGCCuCGAcGCUGUuucGCGCCGCUgaGCc -3'
miRNA:   3'- -GCGGcGCUcCGACG---UGCGGCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 10539 0.71 0.308184
Target:  5'- gCGCCGCccucaGGGGCgcggaucGCGCGuUCGCCgCUGCu -3'
miRNA:   3'- -GCGGCG-----CUCCGa------CGUGC-GGCGG-GACG- -5'
24593 5' -64.2 NC_005264.1 + 11296 0.66 0.55522
Target:  5'- gCGCCaGgGuaGGGCgucCACGCCGCCCa-- -3'
miRNA:   3'- -GCGG-CgC--UCCGac-GUGCGGCGGGacg -5'
24593 5' -64.2 NC_005264.1 + 12116 0.69 0.41268
Target:  5'- cCGCgCGCGAccuuuGGCggGCAgcccCGCCgagaGCCCUGCc -3'
miRNA:   3'- -GCG-GCGCU-----CCGa-CGU----GCGG----CGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.