miRNA display CGI


Results 21 - 40 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 12188 0.76 0.134659
Target:  5'- aGCCcCGAGGCauggucgcagggcgaUGCGCGCCGCCUcGCc -3'
miRNA:   3'- gCGGcGCUCCG---------------ACGUGCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 12786 0.68 0.437755
Target:  5'- aCGaCCGCuAGGCgGCAcCGUCGCCCa-- -3'
miRNA:   3'- -GC-GGCGcUCCGaCGU-GCGGCGGGacg -5'
24593 5' -64.2 NC_005264.1 + 12950 0.67 0.490388
Target:  5'- aCGCCGUugccuaccGGGCggcGCGCGCCGCCg--- -3'
miRNA:   3'- -GCGGCGc-------UCCGa--CGUGCGGCGGgacg -5'
24593 5' -64.2 NC_005264.1 + 16075 0.71 0.289235
Target:  5'- cCGCCGCGcGGCgcuugcuguugccggGUcCGCCGCCCUcGUu -3'
miRNA:   3'- -GCGGCGCuCCGa--------------CGuGCGGCGGGA-CG- -5'
24593 5' -64.2 NC_005264.1 + 16154 0.76 0.13335
Target:  5'- -cUCGCGcaGGGCgGCAaUGCCGCCCUGCg -3'
miRNA:   3'- gcGGCGC--UCCGaCGU-GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 16437 0.66 0.564708
Target:  5'- uGCCGCGGGGcCUGCcCGCgGgUgUGa -3'
miRNA:   3'- gCGGCGCUCC-GACGuGCGgCgGgACg -5'
24593 5' -64.2 NC_005264.1 + 16492 0.67 0.517789
Target:  5'- gGCCuGCGGGGUcgagGCACGCCGgC--GCa -3'
miRNA:   3'- gCGG-CGCUCCGa---CGUGCGGCgGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 20133 0.69 0.396464
Target:  5'- aCGauGCGggcAGGCgaugGCGCGCCGCCg-GCg -3'
miRNA:   3'- -GCggCGC---UCCGa---CGUGCGGCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 22163 0.67 0.472501
Target:  5'- gCGCCGCG-GGCcGUACGUCacaacaGCCCcuagagGCg -3'
miRNA:   3'- -GCGGCGCuCCGaCGUGCGG------CGGGa-----CG- -5'
24593 5' -64.2 NC_005264.1 + 24334 0.66 0.574238
Target:  5'- gGCCGCaguGAacGGCgggGCAuaucccCGCCGCUCUGg -3'
miRNA:   3'- gCGGCG---CU--CCGa--CGU------GCGGCGGGACg -5'
24593 5' -64.2 NC_005264.1 + 25173 0.69 0.380665
Target:  5'- gGUgGCGGGGCaagaaagaaaucUGaGgGCCGCCCUGUg -3'
miRNA:   3'- gCGgCGCUCCG------------ACgUgCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 26012 0.66 0.583804
Target:  5'- uCGgCGCGuGGCUGUaaucgccaaGCGuCCGCCa-GCu -3'
miRNA:   3'- -GCgGCGCuCCGACG---------UGC-GGCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 26363 0.79 0.089728
Target:  5'- gCGCCGCGgcAGGCUGCgcgGCGCCGUCuCUGa -3'
miRNA:   3'- -GCGGCGC--UCCGACG---UGCGGCGG-GACg -5'
24593 5' -64.2 NC_005264.1 + 27849 0.66 0.536391
Target:  5'- uGUCGCGGcGGCauccgcccaaUGCGcCGCCGCCUuuuUGUc -3'
miRNA:   3'- gCGGCGCU-CCG----------ACGU-GCGGCGGG---ACG- -5'
24593 5' -64.2 NC_005264.1 + 29894 0.69 0.41268
Target:  5'- uGCCGCGaAGGCgUGCgGCGCUaCCCcgucgGCg -3'
miRNA:   3'- gCGGCGC-UCCG-ACG-UGCGGcGGGa----CG- -5'
24593 5' -64.2 NC_005264.1 + 30407 0.67 0.494004
Target:  5'- aCGCCgGCGAGcguagcGUUGUACaGCCGCggcuuguagcucgugCCUGCg -3'
miRNA:   3'- -GCGG-CGCUC------CGACGUG-CGGCG---------------GGACG- -5'
24593 5' -64.2 NC_005264.1 + 30848 0.78 0.101659
Target:  5'- uCGUCGuCGGcGGCgGCGCGCCGCCCgguagGCa -3'
miRNA:   3'- -GCGGC-GCU-CCGaCGUGCGGCGGGa----CG- -5'
24593 5' -64.2 NC_005264.1 + 31139 0.67 0.481404
Target:  5'- aCGCCGCGcAGGCc-CACGCUaCgCUUGCg -3'
miRNA:   3'- -GCGGCGC-UCCGacGUGCGGcG-GGACG- -5'
24593 5' -64.2 NC_005264.1 + 31600 0.81 0.063012
Target:  5'- uGCUcucugGCGAGGCgGCGCGCauCGCCCUGCg -3'
miRNA:   3'- gCGG-----CGCUCCGaCGUGCG--GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 32401 0.66 0.536391
Target:  5'- cCGCCGCGAcuuuGuGCUGgaACGCCacuccCUCUGCa -3'
miRNA:   3'- -GCGGCGCU----C-CGACg-UGCGGc----GGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.