miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 160398 0.69 0.41268
Target:  5'- uGCCGCaAGGaagagUGCAgGCUGCUgUGCg -3'
miRNA:   3'- gCGGCGcUCCg----ACGUgCGGCGGgACG- -5'
24593 5' -64.2 NC_005264.1 + 158993 0.66 0.563757
Target:  5'- gGCUGCGAGuCUGCG-GUCGUauuuccuCCUGCg -3'
miRNA:   3'- gCGGCGCUCcGACGUgCGGCG-------GGACG- -5'
24593 5' -64.2 NC_005264.1 + 158829 0.75 0.153893
Target:  5'- cCGCCaagccccugguggGCGAGGagGCAugUGCCGCCCUGCu -3'
miRNA:   3'- -GCGG-------------CGCUCCgaCGU--GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 158750 0.68 0.463681
Target:  5'- cCGUCGUGccGCg--ACGCCGCCCgUGCa -3'
miRNA:   3'- -GCGGCGCucCGacgUGCGGCGGG-ACG- -5'
24593 5' -64.2 NC_005264.1 + 157142 0.73 0.214957
Target:  5'- cCGCCGCcAGGCguUGCcCGCgCGCUCUGUa -3'
miRNA:   3'- -GCGGCGcUCCG--ACGuGCG-GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 156884 0.71 0.288598
Target:  5'- -uCCGCGAa--UGCGcCGCUGCCCUGCg -3'
miRNA:   3'- gcGGCGCUccgACGU-GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 156689 0.7 0.357767
Target:  5'- uGCaCGCGAuGCgcgacggGCGCGCgGCCCUcGCc -3'
miRNA:   3'- gCG-GCGCUcCGa------CGUGCGgCGGGA-CG- -5'
24593 5' -64.2 NC_005264.1 + 156454 0.68 0.441164
Target:  5'- gGCCGUGGagcagcacgagcGGCUGguCGCCGaguucaugcugcagcCCCUGUc -3'
miRNA:   3'- gCGGCGCU------------CCGACguGCGGC---------------GGGACG- -5'
24593 5' -64.2 NC_005264.1 + 155944 0.67 0.490388
Target:  5'- aGCCGCGcgcuGGGaCUGCGCGgcucgcggaCGCUCUGg -3'
miRNA:   3'- gCGGCGC----UCC-GACGUGCg--------GCGGGACg -5'
24593 5' -64.2 NC_005264.1 + 154966 0.71 0.288598
Target:  5'- aCGCCGCaucuGGGGC-GCcgACGCCGCCCc-- -3'
miRNA:   3'- -GCGGCG----CUCCGaCG--UGCGGCGGGacg -5'
24593 5' -64.2 NC_005264.1 + 154824 0.69 0.396464
Target:  5'- gCGCCGuCGuGGCggGCGCcucuGCCGgCCCcGCa -3'
miRNA:   3'- -GCGGC-GCuCCGa-CGUG----CGGC-GGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 154638 0.66 0.55522
Target:  5'- gGCCGCGGGGCauaaUGCcagucACGCUGU--UGCu -3'
miRNA:   3'- gCGGCGCUCCG----ACG-----UGCGGCGggACG- -5'
24593 5' -64.2 NC_005264.1 + 154535 0.68 0.446305
Target:  5'- aCGCCGCGGcGCaggUGCcccCGUCGCCCacggGCg -3'
miRNA:   3'- -GCGGCGCUcCG---ACGu--GCGGCGGGa---CG- -5'
24593 5' -64.2 NC_005264.1 + 154507 0.66 0.583804
Target:  5'- gGuCUGCGGGGCgcaCAUGCCGCgC-GCa -3'
miRNA:   3'- gC-GGCGCUCCGac-GUGCGGCGgGaCG- -5'
24593 5' -64.2 NC_005264.1 + 154029 0.74 0.184127
Target:  5'- uGCCGCGAgcGGCgcucgaagaggagcGCugGCCGUCCUGg -3'
miRNA:   3'- gCGGCGCU--CCGa-------------CGugCGGCGGGACg -5'
24593 5' -64.2 NC_005264.1 + 151428 0.66 0.536391
Target:  5'- cCGCCGCGAcuuuGuGCUGgaACGCCacuccCUCUGCa -3'
miRNA:   3'- -GCGGCGCU----C-CGACg-UGCGGc----GGGACG- -5'
24593 5' -64.2 NC_005264.1 + 150627 0.81 0.063012
Target:  5'- uGCUcucugGCGAGGCgGCGCGCauCGCCCUGCg -3'
miRNA:   3'- gCGG-----CGCUCCGaCGUGCG--GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 149874 0.78 0.101659
Target:  5'- uCGUCGuCGGcGGCgGCGCGCCGCCCgguagGCa -3'
miRNA:   3'- -GCGGC-GCU-CCGaCGUGCGGCGGGa----CG- -5'
24593 5' -64.2 NC_005264.1 + 148396 0.66 0.583804
Target:  5'- uGCCGCcaugccuauuGGGGaggGCAgGCCGCCauacggGCg -3'
miRNA:   3'- gCGGCG----------CUCCga-CGUgCGGCGGga----CG- -5'
24593 5' -64.2 NC_005264.1 + 148316 0.66 0.571375
Target:  5'- gCGCCGguguucguauggucUGAGGUUGCguGCGCgguCGCCCUcucuGCg -3'
miRNA:   3'- -GCGGC--------------GCUCCGACG--UGCG---GCGGGA----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.