miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 46414 1.11 0.00042
Target:  5'- cCGCCGCGAGGCUGCACGCCGCCCUGCg -3'
miRNA:   3'- -GCGGCGCUCCGACGUGCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 61846 0.72 0.270003
Target:  5'- gCGCCGCGuacGGGUUGUuggcgaaaaACGCCGCaCCaGCc -3'
miRNA:   3'- -GCGGCGC---UCCGACG---------UGCGGCG-GGaCG- -5'
24593 5' -64.2 NC_005264.1 + 101558 0.71 0.276092
Target:  5'- gGCCGUGAuGaCUGCAUGCaCGUCCUuGCa -3'
miRNA:   3'- gCGGCGCUcC-GACGUGCG-GCGGGA-CG- -5'
24593 5' -64.2 NC_005264.1 + 148396 0.66 0.583804
Target:  5'- uGCCGCcaugccuauuGGGGaggGCAgGCCGCCauacggGCg -3'
miRNA:   3'- gCGGCG----------CUCCga-CGUgCGGCGGga----CG- -5'
24593 5' -64.2 NC_005264.1 + 149874 0.78 0.101659
Target:  5'- uCGUCGuCGGcGGCgGCGCGCCGCCCgguagGCa -3'
miRNA:   3'- -GCGGC-GCU-CCGaCGUGCGGCGGGa----CG- -5'
24593 5' -64.2 NC_005264.1 + 68257 0.76 0.13335
Target:  5'- gCGCCGCGGGcggccuGCUGC-UGCCGCCUcuuUGCg -3'
miRNA:   3'- -GCGGCGCUC------CGACGuGCGGCGGG---ACG- -5'
24593 5' -64.2 NC_005264.1 + 43321 0.76 0.143459
Target:  5'- uCGuUCGCGAgGGCUGC-CGCCucggagcacGCCCUGCg -3'
miRNA:   3'- -GC-GGCGCU-CCGACGuGCGG---------CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 158829 0.75 0.153893
Target:  5'- cCGCCaagccccugguggGCGAGGagGCAugUGCCGCCCUGCu -3'
miRNA:   3'- -GCGG-------------CGCUCCgaCGU--GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 154029 0.74 0.184127
Target:  5'- uGCCGCGAgcGGCgcucgaagaggagcGCugGCCGUCCUGg -3'
miRNA:   3'- gCGGCGCU--CCGa-------------CGugCGGCGGGACg -5'
24593 5' -64.2 NC_005264.1 + 78023 0.73 0.235186
Target:  5'- uGaCgGCGAGGCUucgcuccGUGCGCCauGCCCUGCc -3'
miRNA:   3'- gC-GgCGCUCCGA-------CGUGCGG--CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 157142 0.73 0.214957
Target:  5'- cCGCCGCcAGGCguUGCcCGCgCGCUCUGUa -3'
miRNA:   3'- -GCGGCGcUCCG--ACGuGCG-GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 142684 0.74 0.18239
Target:  5'- uGCCGCGAucuugggcgccGGCgGCGCGCCaCgCCUGCc -3'
miRNA:   3'- gCGGCGCU-----------CCGaCGUGCGGcG-GGACG- -5'
24593 5' -64.2 NC_005264.1 + 146664 0.83 0.048074
Target:  5'- uGCCGCGAccgaccuccgcgcagGGCgGCAuUGCCGCCCUGCg -3'
miRNA:   3'- gCGGCGCU---------------CCGaCGU-GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 69598 0.73 0.225138
Target:  5'- gCGCCGaCGAGG----GCGCCGCCCgGCg -3'
miRNA:   3'- -GCGGC-GCUCCgacgUGCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 150627 0.81 0.063012
Target:  5'- uGCUcucugGCGAGGCgGCGCGCauCGCCCUGCg -3'
miRNA:   3'- gCGG-----CGCUCCGaCGUGCG--GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 85033 0.74 0.181958
Target:  5'- uGCCGCGGGGCauucgGCaACGUCGCuacaaggCCUGCc -3'
miRNA:   3'- gCGGCGCUCCGa----CG-UGCGGCG-------GGACG- -5'
24593 5' -64.2 NC_005264.1 + 64152 0.73 0.225138
Target:  5'- gCGCCGCGAuccGGCcggugUGCaaGCGCCGCCa-GCa -3'
miRNA:   3'- -GCGGCGCU---CCG-----ACG--UGCGGCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 122786 0.71 0.274254
Target:  5'- uGCCGcCGGGGCgcUGCGggcccuuggucgacCGCCGCCgauCUGCg -3'
miRNA:   3'- gCGGC-GCUCCG--ACGU--------------GCGGCGG---GACG- -5'
24593 5' -64.2 NC_005264.1 + 69829 0.79 0.087507
Target:  5'- aCGCCGcCGGGGUga-AgGCCGCCCUGCu -3'
miRNA:   3'- -GCGGC-GCUCCGacgUgCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 131215 0.76 0.134659
Target:  5'- aGCCcCGAGGCauggucgcagggcgaUGCGCGCCGCCUcGCc -3'
miRNA:   3'- gCGGcGCUCCG---------------ACGUGCGGCGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.