miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 3808 0.71 0.288598
Target:  5'- uGuuGCGAGGaggugcuccCUGCGCGCgGagaCCUGCu -3'
miRNA:   3'- gCggCGCUCC---------GACGUGCGgCg--GGACG- -5'
24593 5' -64.2 NC_005264.1 + 101558 0.71 0.276092
Target:  5'- gGCCGUGAuGaCUGCAUGCaCGUCCUuGCa -3'
miRNA:   3'- gCGGCGCUcC-GACGUGCG-GCGGGA-CG- -5'
24593 5' -64.2 NC_005264.1 + 142684 0.74 0.18239
Target:  5'- uGCCGCGAucuugggcgccGGCgGCGCGCCaCgCCUGCc -3'
miRNA:   3'- gCGGCGCU-----------CCGaCGUGCGGcG-GGACG- -5'
24593 5' -64.2 NC_005264.1 + 69829 0.79 0.087507
Target:  5'- aCGCCGcCGGGGUga-AgGCCGCCCUGCu -3'
miRNA:   3'- -GCGGC-GCUCCGacgUgCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 5032 0.7 0.335853
Target:  5'- gGCCaCGAGGUuccgcgucgUGgGCGCCGCCUaGCu -3'
miRNA:   3'- gCGGcGCUCCG---------ACgUGCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 57186 0.71 0.308184
Target:  5'- uGCCGCc-GGCaaaGCGCCGCCCgUGCc -3'
miRNA:   3'- gCGGCGcuCCGacgUGCGGCGGG-ACG- -5'
24593 5' -64.2 NC_005264.1 + 61846 0.72 0.270003
Target:  5'- gCGCCGCGuacGGGUUGUuggcgaaaaACGCCGCaCCaGCc -3'
miRNA:   3'- -GCGGCGC---UCCGACG---------UGCGGCG-GGaCG- -5'
24593 5' -64.2 NC_005264.1 + 150627 0.81 0.063012
Target:  5'- uGCUcucugGCGAGGCgGCGCGCauCGCCCUGCg -3'
miRNA:   3'- gCGG-----CGCUCCGaCGUGCG--GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 133077 0.71 0.304187
Target:  5'- aGCCGCGAGcgagcuguggugcgaGCUGCACGaucuagcugaGCaCCUGCu -3'
miRNA:   3'- gCGGCGCUC---------------CGACGUGCgg--------CG-GGACG- -5'
24593 5' -64.2 NC_005264.1 + 146664 0.83 0.048074
Target:  5'- uGCCGCGAccgaccuccgcgcagGGCgGCAuUGCCGCCCUGCg -3'
miRNA:   3'- gCGGCGCU---------------CCGaCGU-GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 122786 0.71 0.274254
Target:  5'- uGCCGcCGGGGCgcUGCGggcccuuggucgacCGCCGCCgauCUGCg -3'
miRNA:   3'- gCGGC-GCUCCG--ACGU--------------GCGGCGG---GACG- -5'
24593 5' -64.2 NC_005264.1 + 156884 0.71 0.288598
Target:  5'- -uCCGCGAa--UGCGcCGCUGCCCUGCg -3'
miRNA:   3'- gcGGCGCUccgACGU-GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 69598 0.73 0.225138
Target:  5'- gCGCCGaCGAGG----GCGCCGCCCgGCg -3'
miRNA:   3'- -GCGGC-GCUCCgacgUGCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 154029 0.74 0.184127
Target:  5'- uGCCGCGAgcGGCgcucgaagaggagcGCugGCCGUCCUGg -3'
miRNA:   3'- gCGGCGCU--CCGa-------------CGugCGGCGGGACg -5'
24593 5' -64.2 NC_005264.1 + 43321 0.76 0.143459
Target:  5'- uCGuUCGCGAgGGCUGC-CGCCucggagcacGCCCUGCg -3'
miRNA:   3'- -GC-GGCGCU-CCGACGuGCGG---------CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 149874 0.78 0.101659
Target:  5'- uCGUCGuCGGcGGCgGCGCGCCGCCCgguagGCa -3'
miRNA:   3'- -GCGGC-GCU-CCGaCGUGCGGCGGGa----CG- -5'
24593 5' -64.2 NC_005264.1 + 60895 0.69 0.372924
Target:  5'- aCGCCGCGgugGGGCcG-ACGCCGCCaguuucGCg -3'
miRNA:   3'- -GCGGCGC---UCCGaCgUGCGGCGGga----CG- -5'
24593 5' -64.2 NC_005264.1 + 111582 0.7 0.350352
Target:  5'- cCGCCGUGGuguucucgugguGGCUGCACaaCGCgCUGUg -3'
miRNA:   3'- -GCGGCGCU------------CCGACGUGcgGCGgGACG- -5'
24593 5' -64.2 NC_005264.1 + 75206 0.7 0.321796
Target:  5'- gCGCCccaCGcGGCUGCAU-CgGCCCUGCg -3'
miRNA:   3'- -GCGGc--GCuCCGACGUGcGgCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 129566 0.71 0.308184
Target:  5'- gCGCCGCccucaGGGGCgcggaucGCGCGuUCGCCgCUGCu -3'
miRNA:   3'- -GCGGCG-----CUCCGa------CGUGC-GGCGG-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.