miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24594 3' -57.5 NC_005264.1 + 47077 1.09 0.002421
Target:  5'- gACGGAAGGCGAGAAGUGGCACGGCGAg -3'
miRNA:   3'- -UGCCUUCCGCUCUUCACCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 20244 0.69 0.705049
Target:  5'- gACGGGuGGGC-AGggGUugcGGCGCGGCc- -3'
miRNA:   3'- -UGCCU-UCCGcUCuuCA---CCGUGCCGcu -5'
24594 3' -57.5 NC_005264.1 + 132571 0.69 0.714888
Target:  5'- -gGGGAGGaggaaGAGGAGagcGGCGCgGGCGGg -3'
miRNA:   3'- ugCCUUCCg----CUCUUCa--CCGUG-CCGCU- -5'
24594 3' -57.5 NC_005264.1 + 162175 0.66 0.879048
Target:  5'- cACGGGuGGaGCGGGGAGgggGGgGCGcGUGAg -3'
miRNA:   3'- -UGCCU-UC-CGCUCUUCa--CCgUGC-CGCU- -5'
24594 3' -57.5 NC_005264.1 + 124290 0.78 0.272926
Target:  5'- cCGGGAGGCGAGucGcGGCcggACGGCGGg -3'
miRNA:   3'- uGCCUUCCGCUCuuCaCCG---UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 162237 0.77 0.299288
Target:  5'- gGCGGggGG-GGGggG-GGCuACGGCGGg -3'
miRNA:   3'- -UGCCuuCCgCUCuuCaCCG-UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 154808 0.76 0.350065
Target:  5'- gGCGGAGGGCGc--GGUGGCGCcgucguGGCGGg -3'
miRNA:   3'- -UGCCUUCCGCucuUCACCGUG------CCGCU- -5'
24594 3' -57.5 NC_005264.1 + 84911 0.76 0.3578
Target:  5'- -gGGAGGGCGGGAAGagccaGGCGCGG-GAc -3'
miRNA:   3'- ugCCUUCCGCUCUUCa----CCGUGCCgCU- -5'
24594 3' -57.5 NC_005264.1 + 143594 0.71 0.614816
Target:  5'- cCGGAGGGaaCGAGAA-UGGCGCGGgGu -3'
miRNA:   3'- uGCCUUCC--GCUCUUcACCGUGCCgCu -5'
24594 3' -57.5 NC_005264.1 + 125467 0.69 0.704061
Target:  5'- gGCGGcgucgcuGGCgGAGAacuccucGGcGGCGCGGCGAa -3'
miRNA:   3'- -UGCCuu-----CCG-CUCU-------UCaCCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 17135 0.7 0.645057
Target:  5'- uGCGGuacGGCGucGAGG-GGCGCGGCu- -3'
miRNA:   3'- -UGCCuu-CCGCu-CUUCaCCGUGCCGcu -5'
24594 3' -57.5 NC_005264.1 + 150597 0.71 0.593703
Target:  5'- gACGuGGAGGCGccAGAGGUGGgGCgagucugcucucuGGCGAg -3'
miRNA:   3'- -UGC-CUUCCGC--UCUUCACCgUG-------------CCGCU- -5'
24594 3' -57.5 NC_005264.1 + 123552 0.83 0.127395
Target:  5'- cGCGGAGGGgGAGggGUGGUcuuCGGCGu -3'
miRNA:   3'- -UGCCUUCCgCUCuuCACCGu--GCCGCu -5'
24594 3' -57.5 NC_005264.1 + 25936 0.7 0.645057
Target:  5'- aGCGGAcgAGGCGAcGAAGaUGaGgACGGCGc -3'
miRNA:   3'- -UGCCU--UCCGCU-CUUC-AC-CgUGCCGCu -5'
24594 3' -57.5 NC_005264.1 + 150208 0.82 0.152186
Target:  5'- cCGGAGGGCGAGcGAGUGGgACGGgGGg -3'
miRNA:   3'- uGCCUUCCGCUC-UUCACCgUGCCgCU- -5'
24594 3' -57.5 NC_005264.1 + 28024 0.75 0.381718
Target:  5'- uCGG-GGGCGGGAGGUcuuccGGCGCGcGCGAc -3'
miRNA:   3'- uGCCuUCCGCUCUUCA-----CCGUGC-CGCU- -5'
24594 3' -57.5 NC_005264.1 + 36815 0.7 0.675207
Target:  5'- uGCGGcgcAGGCGA-----GGCGCGGCGAa -3'
miRNA:   3'- -UGCCu--UCCGCUcuucaCCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 19416 0.69 0.714888
Target:  5'- -gGGGAGGCGAGGcgccggguGUGGCcGCGGgGc -3'
miRNA:   3'- ugCCUUCCGCUCUu-------CACCG-UGCCgCu -5'
24594 3' -57.5 NC_005264.1 + 121917 0.78 0.242634
Target:  5'- cGCGGcgcGGCGGGGAG-GGCgACGGCGAg -3'
miRNA:   3'- -UGCCuu-CCGCUCUUCaCCG-UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 22766 0.77 0.30618
Target:  5'- aGCGGcGGGCaauGAGG-GGCGCGGCGAc -3'
miRNA:   3'- -UGCCuUCCGcu-CUUCaCCGUGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.