miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24594 5' -62.2 NC_005264.1 + 598 0.69 0.508699
Target:  5'- aGCccCGCCGUaGCCCCCcccccCCccGCCGGc -3'
miRNA:   3'- -CGa-GCGGCG-CGGGGGau---GGuaCGGCC- -5'
24594 5' -62.2 NC_005264.1 + 1513 0.68 0.527238
Target:  5'- cGCUgGCUGCGCcguuuuuuggggCCCCgcggcguugACCGcGCCGGc -3'
miRNA:   3'- -CGAgCGGCGCG------------GGGGa--------UGGUaCGGCC- -5'
24594 5' -62.2 NC_005264.1 + 2179 0.68 0.584183
Target:  5'- cGCg-GCCGUuGCCCCU--CCAuUGCCGGc -3'
miRNA:   3'- -CGagCGGCG-CGGGGGauGGU-ACGGCC- -5'
24594 5' -62.2 NC_005264.1 + 3919 0.68 0.588032
Target:  5'- cGCUCGuuGCGCUcuguauuagUCUUGCCuucggcggguugcuUGCCGGc -3'
miRNA:   3'- -CGAGCggCGCGG---------GGGAUGGu-------------ACGGCC- -5'
24594 5' -62.2 NC_005264.1 + 6390 0.7 0.429149
Target:  5'- cGCUCG-UGCuGCUCCacgGCCAUGCCGa -3'
miRNA:   3'- -CGAGCgGCG-CGGGGga-UGGUACGGCc -5'
24594 5' -62.2 NC_005264.1 + 6832 0.71 0.388238
Target:  5'- aGCgUCGCCGgGCguaCCUUGCUgguUGCCGGg -3'
miRNA:   3'- -CG-AGCGGCgCGg--GGGAUGGu--ACGGCC- -5'
24594 5' -62.2 NC_005264.1 + 9554 0.73 0.307703
Target:  5'- cGCgUCGcCCGCGCCUCgCUACagaaGCCGGg -3'
miRNA:   3'- -CG-AGC-GGCGCGGGG-GAUGgua-CGGCC- -5'
24594 5' -62.2 NC_005264.1 + 11694 0.66 0.690443
Target:  5'- uCUCGUUugGCGUCUCC-GCCAUGCCu- -3'
miRNA:   3'- cGAGCGG--CGCGGGGGaUGGUACGGcc -5'
24594 5' -62.2 NC_005264.1 + 14196 0.71 0.388238
Target:  5'- -aUCGCCGuCGCCCCaucgGCCAcGgCGGa -3'
miRNA:   3'- cgAGCGGC-GCGGGGga--UGGUaCgGCC- -5'
24594 5' -62.2 NC_005264.1 + 16075 0.67 0.60347
Target:  5'- --cCGCCGCGCggCgCUUGCUGUuGCCGGg -3'
miRNA:   3'- cgaGCGGCGCG--GgGGAUGGUA-CGGCC- -5'
24594 5' -62.2 NC_005264.1 + 16848 0.67 0.613145
Target:  5'- cGCaCGCCGUagagGCCCUCguugACCuUGUCGGc -3'
miRNA:   3'- -CGaGCGGCG----CGGGGGa---UGGuACGGCC- -5'
24594 5' -62.2 NC_005264.1 + 18419 0.68 0.584183
Target:  5'- gGCgcaGgCGCGCCCUCUcGCUcgGCgCGGg -3'
miRNA:   3'- -CGag-CgGCGCGGGGGA-UGGuaCG-GCC- -5'
24594 5' -62.2 NC_005264.1 + 19743 0.76 0.19979
Target:  5'- gGUUCGCCGUGCCCCCagcAUCGcGCCGc -3'
miRNA:   3'- -CGAGCGGCGCGGGGGa--UGGUaCGGCc -5'
24594 5' -62.2 NC_005264.1 + 22051 0.68 0.527238
Target:  5'- aUUUGCCGCuGUCCCCU-CCGUGguaCGGc -3'
miRNA:   3'- cGAGCGGCG-CGGGGGAuGGUACg--GCC- -5'
24594 5' -62.2 NC_005264.1 + 22285 0.69 0.517936
Target:  5'- --cCGCgCGCGCCCuUCUGCCAUcccaGCCGc -3'
miRNA:   3'- cgaGCG-GCGCGGG-GGAUGGUA----CGGCc -5'
24594 5' -62.2 NC_005264.1 + 25129 0.68 0.574583
Target:  5'- gGCUCGCCGUGUCUCg-GCCGaguaguugGCCGu -3'
miRNA:   3'- -CGAGCGGCGCGGGGgaUGGUa-------CGGCc -5'
24594 5' -62.2 NC_005264.1 + 26898 0.67 0.642222
Target:  5'- aUUCGCU-CGCCCCCggccGCCuGUGCCa- -3'
miRNA:   3'- cGAGCGGcGCGGGGGa---UGG-UACGGcc -5'
24594 5' -62.2 NC_005264.1 + 29316 0.67 0.602503
Target:  5'- --gCGCCaugcauggacacaGCGCCUCCUGCgGcuacgacgucUGCCGGg -3'
miRNA:   3'- cgaGCGG-------------CGCGGGGGAUGgU----------ACGGCC- -5'
24594 5' -62.2 NC_005264.1 + 31608 0.67 0.632528
Target:  5'- gGCgaggCGgCGCGCaucgCCCUgcgACCAUGCCucGGg -3'
miRNA:   3'- -CGa---GCgGCGCGg---GGGA---UGGUACGG--CC- -5'
24594 5' -62.2 NC_005264.1 + 31805 0.7 0.429993
Target:  5'- cGgUCGCCGcCGCaggucgugacgcguaCUCUGCCGUGCCGc -3'
miRNA:   3'- -CgAGCGGC-GCGg--------------GGGAUGGUACGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.