miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 3' -51.5 NC_005264.1 + 47982 1.11 0.006671
Target:  5'- cGCCUAGAUUCACCGUCGACGAUCGCAc -3'
miRNA:   3'- -CGGAUCUAAGUGGCAGCUGCUAGCGU- -5'
24595 3' -51.5 NC_005264.1 + 60841 0.74 0.773471
Target:  5'- aGCUUGGcgUCGgCGUCGGCGcgUGCGc -3'
miRNA:   3'- -CGGAUCuaAGUgGCAGCUGCuaGCGU- -5'
24595 3' -51.5 NC_005264.1 + 86758 0.74 0.792224
Target:  5'- cGCCcgUAGA---GCCGUCGACGcUCGCGg -3'
miRNA:   3'- -CGG--AUCUaagUGGCAGCUGCuAGCGU- -5'
24595 3' -51.5 NC_005264.1 + 159086 0.73 0.827869
Target:  5'- aGCCUuGcgUcCGCCGUgaagcCGGCGAUCGCGa -3'
miRNA:   3'- -CGGAuCuaA-GUGGCA-----GCUGCUAGCGU- -5'
24595 3' -51.5 NC_005264.1 + 156271 0.72 0.889886
Target:  5'- cCCUGGGgggcgcaUCACCGUgGACGAggCGCu -3'
miRNA:   3'- cGGAUCUa------AGUGGCAgCUGCUa-GCGu -5'
24595 3' -51.5 NC_005264.1 + 37244 0.72 0.889886
Target:  5'- cCCUGGGgggcgcaUCACCGUgGACGAggCGCu -3'
miRNA:   3'- cGGAUCUa------AGUGGCAgCUGCUa-GCGu -5'
24595 3' -51.5 NC_005264.1 + 129973 0.71 0.903154
Target:  5'- uGCCUccaAGGUUCACC-UCGAacaUGAUCGUg -3'
miRNA:   3'- -CGGA---UCUAAGUGGcAGCU---GCUAGCGu -5'
24595 3' -51.5 NC_005264.1 + 129189 0.71 0.915457
Target:  5'- aCCUGGGUcggcuagCACCGUCGACcaaccGUCGCc -3'
miRNA:   3'- cGGAUCUAa------GUGGCAGCUGc----UAGCGu -5'
24595 3' -51.5 NC_005264.1 + 65984 0.71 0.921241
Target:  5'- cGCCUAGugucUCugCaGUCGACG-UCGUAg -3'
miRNA:   3'- -CGGAUCua--AGugG-CAGCUGCuAGCGU- -5'
24595 3' -51.5 NC_005264.1 + 88509 0.7 0.932069
Target:  5'- cGCCUcugAGA-UCACCGaCGACGAcUCGUu -3'
miRNA:   3'- -CGGA---UCUaAGUGGCaGCUGCU-AGCGu -5'
24595 3' -51.5 NC_005264.1 + 51080 0.7 0.937112
Target:  5'- cGCCUAGAccugcUUCGCgGUCGcCGGUgcUGCGg -3'
miRNA:   3'- -CGGAUCU-----AAGUGgCAGCuGCUA--GCGU- -5'
24595 3' -51.5 NC_005264.1 + 131590 0.69 0.94908
Target:  5'- cGCCUAGGUguggagggagcggCGCgCGUgGGCGcgCGCGg -3'
miRNA:   3'- -CGGAUCUAa------------GUG-GCAgCUGCuaGCGU- -5'
24595 3' -51.5 NC_005264.1 + 146062 0.68 0.97454
Target:  5'- gGCCacAGAgacCGCCGgCGACGAUCGgGa -3'
miRNA:   3'- -CGGa-UCUaa-GUGGCaGCUGCUAGCgU- -5'
24595 3' -51.5 NC_005264.1 + 19094 0.68 0.977085
Target:  5'- aGCCaGGAcugCACCG-CGGCGG-CGCGg -3'
miRNA:   3'- -CGGaUCUaa-GUGGCaGCUGCUaGCGU- -5'
24595 3' -51.5 NC_005264.1 + 107571 0.67 0.983213
Target:  5'- gGCCUAGcg-CGCCccagcucuucgUGGCGGUCGCAu -3'
miRNA:   3'- -CGGAUCuaaGUGGca---------GCUGCUAGCGU- -5'
24595 3' -51.5 NC_005264.1 + 19738 0.67 0.988457
Target:  5'- uUCUAGGUUCGCCGUgcccccagcaucgCGccGCGAUUGUg -3'
miRNA:   3'- cGGAUCUAAGUGGCA-------------GC--UGCUAGCGu -5'
24595 3' -51.5 NC_005264.1 + 107623 0.67 0.988745
Target:  5'- cGCCUGGGccgcgggagaaugagUCugCGcCGACGuuUCGCGg -3'
miRNA:   3'- -CGGAUCUa--------------AGugGCaGCUGCu-AGCGU- -5'
24595 3' -51.5 NC_005264.1 + 80903 0.66 0.989975
Target:  5'- cGCCggagGGAcaacCGCCGacuacgCGACGAUCGUu -3'
miRNA:   3'- -CGGa---UCUaa--GUGGCa-----GCUGCUAGCGu -5'
24595 3' -51.5 NC_005264.1 + 27645 0.66 0.989975
Target:  5'- aGCCaGGA-UCGCCGauUUGGCGG-CGCAc -3'
miRNA:   3'- -CGGaUCUaAGUGGC--AGCUGCUaGCGU- -5'
24595 3' -51.5 NC_005264.1 + 129550 0.66 0.991215
Target:  5'- gGCUUAGGcgUCGCCG-CGugG-UCGUg -3'
miRNA:   3'- -CGGAUCUa-AGUGGCaGCugCuAGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.