miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
24595	3'	-51.5	NC_005264.1	+	129550	0.66	0.991215
	Target:  5'- gGCUUAGGcgUCGCCG-CGugG-UCGUg -3' miRNA:   3'- -CGGAUCUa-AGUGGCaGCugCuAGCGu -5'
24595	3'	-51.5	NC_005264.1	+	55446	0.66	0.992224
	Target:  5'- gGCUUGGGUggucgauucguccUCAUCGUCGGCGAggGgGa -3' miRNA:   3'- -CGGAUCUA-------------AGUGGCAGCUGCUagCgU- -5'
24595	3'	-51.5	NC_005264.1	+	27832	0.66	0.993331
	Target:  5'- gGCCUAGAUcgcgcCACUGUCG-CGGcgGCAu -3' miRNA:   3'- -CGGAUCUAa----GUGGCAGCuGCUagCGU- -5'
24595	3'	-51.5	NC_005264.1	+	25784	0.66	0.994223
	Target:  5'- cGCCUGGAUcUGCUcaCGGCGGUCaGCu -3' miRNA:   3'- -CGGAUCUAaGUGGcaGCUGCUAG-CGu -5'
24595	3'	-51.5	NC_005264.1	+	35470	0.66	0.995017
	Target:  5'- cGCCUGacgcGAgagUGCCG-CGGcCGAUCGCGa -3' miRNA:   3'- -CGGAU----CUaa-GUGGCaGCU-GCUAGCGU- -5'
24595	3'	-51.5	NC_005264.1	+	39106	0.66	0.995017
	Target:  5'- cGUCUGGAccagCuGCUGUCGugGA-CGCGg -3' miRNA:   3'- -CGGAUCUaa--G-UGGCAGCugCUaGCGU- -5'
24595	3'	-51.5	NC_005264.1	+	158133	0.66	0.995017
	Target:  5'- cGUCUGGAccagCuGCUGUCGugGA-CGCGg -3' miRNA:   3'- -CGGAUCUaa--G-UGGCAGCugCUaGCGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home