Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24595 | 3' | -51.5 | NC_005264.1 | + | 129973 | 0.71 | 0.903154 |
Target: 5'- uGCCUccaAGGUUCACC-UCGAacaUGAUCGUg -3' miRNA: 3'- -CGGA---UCUAAGUGGcAGCU---GCUAGCGu -5' |
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24595 | 3' | -51.5 | NC_005264.1 | + | 156271 | 0.72 | 0.889886 |
Target: 5'- cCCUGGGgggcgcaUCACCGUgGACGAggCGCu -3' miRNA: 3'- cGGAUCUa------AGUGGCAgCUGCUa-GCGu -5' |
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24595 | 3' | -51.5 | NC_005264.1 | + | 37244 | 0.72 | 0.889886 |
Target: 5'- cCCUGGGgggcgcaUCACCGUgGACGAggCGCu -3' miRNA: 3'- cGGAUCUa------AGUGGCAgCUGCUa-GCGu -5' |
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24595 | 3' | -51.5 | NC_005264.1 | + | 159086 | 0.73 | 0.827869 |
Target: 5'- aGCCUuGcgUcCGCCGUgaagcCGGCGAUCGCGa -3' miRNA: 3'- -CGGAuCuaA-GUGGCA-----GCUGCUAGCGU- -5' |
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24595 | 3' | -51.5 | NC_005264.1 | + | 86758 | 0.74 | 0.792224 |
Target: 5'- cGCCcgUAGA---GCCGUCGACGcUCGCGg -3' miRNA: 3'- -CGG--AUCUaagUGGCAGCUGCuAGCGU- -5' |
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24595 | 3' | -51.5 | NC_005264.1 | + | 60841 | 0.74 | 0.773471 |
Target: 5'- aGCUUGGcgUCGgCGUCGGCGcgUGCGc -3' miRNA: 3'- -CGGAUCuaAGUgGCAGCUGCuaGCGU- -5' |
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24595 | 3' | -51.5 | NC_005264.1 | + | 47982 | 1.11 | 0.006671 |
Target: 5'- cGCCUAGAUUCACCGUCGACGAUCGCAc -3' miRNA: 3'- -CGGAUCUAAGUGGCAGCUGCUAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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