miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 5' -57.1 NC_005264.1 + 21053 0.66 0.901187
Target:  5'- aCCuggcCGGCCuuaGCGCGuUGGCCAAg- -3'
miRNA:   3'- gGGu---GCUGGuacCGCGC-ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 152951 0.66 0.894814
Target:  5'- gCCGCcagggcugggaaGGCCGUGGCGCGccgGGaCCGc-- -3'
miRNA:   3'- gGGUG------------CUGGUACCGCGCa--CC-GGUuac -5'
24595 5' -57.1 NC_005264.1 + 47394 0.66 0.894814
Target:  5'- --aGCGAgaGUGGCGCGUGGUUGGg- -3'
miRNA:   3'- gggUGCUggUACCGCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 16765 0.66 0.894814
Target:  5'- aCCCGCG-CgGgGGCGCGcuguucgGGCCGGa- -3'
miRNA:   3'- -GGGUGCuGgUaCCGCGCa------CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 50499 0.66 0.894165
Target:  5'- gCCACGGCCGcGGCcaguucuGCcuUGGUCGAUGu -3'
miRNA:   3'- gGGUGCUGGUaCCG-------CGc-ACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 149241 0.66 0.88822
Target:  5'- gUCGCuGGCCgguGUGGCGCuggGGCCGAa- -3'
miRNA:   3'- gGGUG-CUGG---UACCGCGca-CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 33925 0.66 0.88822
Target:  5'- gCCGCcaggcugggaaGGCCGUGGCGCGccgGGaCCGc-- -3'
miRNA:   3'- gGGUG-----------CUGGUACCGCGCa--CC-GGUuac -5'
24595 5' -57.1 NC_005264.1 + 91858 0.66 0.881408
Target:  5'- cCCUGCGACCG-GGCGacaaUGGUCGAg- -3'
miRNA:   3'- -GGGUGCUGGUaCCGCgc--ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 93001 0.66 0.881408
Target:  5'- -aCGCGGCCGUagcgGGgGCagucaaggcaGUGGCUAGUGg -3'
miRNA:   3'- ggGUGCUGGUA----CCgCG----------CACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 25199 0.66 0.881408
Target:  5'- gCCGCGuACguguUGGCGCacacgGUGGCCAGg- -3'
miRNA:   3'- gGGUGC-UGgu--ACCGCG-----CACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 79723 0.66 0.874381
Target:  5'- cUCCGCGGCCuUGGCGCccGUcGGCg---- -3'
miRNA:   3'- -GGGUGCUGGuACCGCG--CA-CCGguuac -5'
24595 5' -57.1 NC_005264.1 + 124831 0.66 0.874381
Target:  5'- gCCCACGGCguUcaauaguccggcGGCG-GUGGCCGc-- -3'
miRNA:   3'- -GGGUGCUGguA------------CCGCgCACCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 5805 0.66 0.874381
Target:  5'- gCCCACGGCguUcaauaguccggcGGCG-GUGGCCGc-- -3'
miRNA:   3'- -GGGUGCUGguA------------CCGCgCACCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 79899 0.66 0.867144
Target:  5'- gCCugGuCUuUGcguGCGCGUGGCCGAc- -3'
miRNA:   3'- gGGugCuGGuAC---CGCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 90765 0.66 0.867144
Target:  5'- aCCGCGACCAgcaCGuCGUcGGCCAGc- -3'
miRNA:   3'- gGGUGCUGGUaccGC-GCA-CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 57988 0.67 0.859703
Target:  5'- cCCCgcgcgGCGGCCGUGGCucagcggccccgGCGgacaGGCCGucGUGc -3'
miRNA:   3'- -GGG-----UGCUGGUACCG------------CGCa---CCGGU--UAC- -5'
24595 5' -57.1 NC_005264.1 + 32060 0.67 0.859703
Target:  5'- cUCUugGAUagUcgGGCaGCGUGGCCAc-- -3'
miRNA:   3'- -GGGugCUG--GuaCCG-CGCACCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 25145 0.67 0.859703
Target:  5'- gCCGaguaguUGGCCGUGaGCGaggaCGUGGCCAcgGa -3'
miRNA:   3'- gGGU------GCUGGUAC-CGC----GCACCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 135176 0.67 0.852062
Target:  5'- gCCGCGuACCucGGUccgagcgccGCGUGGCCAAa- -3'
miRNA:   3'- gGGUGC-UGGuaCCG---------CGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 161635 0.67 0.852062
Target:  5'- cCCCGCaGCCAUGGCcGCGgacGCCc--- -3'
miRNA:   3'- -GGGUGcUGGUACCG-CGCac-CGGuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.