Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24595 | 5' | -57.1 | NC_005264.1 | + | 149241 | 0.66 | 0.88822 |
Target: 5'- gUCGCuGGCCgguGUGGCGCuggGGCCGAa- -3' miRNA: 3'- gGGUG-CUGG---UACCGCGca-CCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 79899 | 0.66 | 0.867144 |
Target: 5'- gCCugGuCUuUGcguGCGCGUGGCCGAc- -3' miRNA: 3'- gGGugCuGGuAC---CGCGCACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 47394 | 0.66 | 0.894814 |
Target: 5'- --aGCGAgaGUGGCGCGUGGUUGGg- -3' miRNA: 3'- gggUGCUggUACCGCGCACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 50499 | 0.66 | 0.894165 |
Target: 5'- gCCACGGCCGcGGCcaguucuGCcuUGGUCGAUGu -3' miRNA: 3'- gGGUGCUGGUaCCG-------CGc-ACCGGUUAC- -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 124831 | 0.66 | 0.874381 |
Target: 5'- gCCCACGGCguUcaauaguccggcGGCG-GUGGCCGc-- -3' miRNA: 3'- -GGGUGCUGguA------------CCGCgCACCGGUuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 79723 | 0.66 | 0.874381 |
Target: 5'- cUCCGCGGCCuUGGCGCccGUcGGCg---- -3' miRNA: 3'- -GGGUGCUGGuACCGCG--CA-CCGguuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 90765 | 0.66 | 0.867144 |
Target: 5'- aCCGCGACCAgcaCGuCGUcGGCCAGc- -3' miRNA: 3'- gGGUGCUGGUaccGC-GCA-CCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 16765 | 0.66 | 0.894814 |
Target: 5'- aCCCGCG-CgGgGGCGCGcuguucgGGCCGGa- -3' miRNA: 3'- -GGGUGCuGgUaCCGCGCa------CCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 152951 | 0.66 | 0.894814 |
Target: 5'- gCCGCcagggcugggaaGGCCGUGGCGCGccgGGaCCGc-- -3' miRNA: 3'- gGGUG------------CUGGUACCGCGCa--CC-GGUuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 21053 | 0.66 | 0.901187 |
Target: 5'- aCCuggcCGGCCuuaGCGCGuUGGCCAAg- -3' miRNA: 3'- gGGu---GCUGGuacCGCGC-ACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 93001 | 0.66 | 0.881408 |
Target: 5'- -aCGCGGCCGUagcgGGgGCagucaaggcaGUGGCUAGUGg -3' miRNA: 3'- ggGUGCUGGUA----CCgCG----------CACCGGUUAC- -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 33925 | 0.66 | 0.88822 |
Target: 5'- gCCGCcaggcugggaaGGCCGUGGCGCGccgGGaCCGc-- -3' miRNA: 3'- gGGUG-----------CUGGUACCGCGCa--CC-GGUuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 25199 | 0.66 | 0.881408 |
Target: 5'- gCCGCGuACguguUGGCGCacacgGUGGCCAGg- -3' miRNA: 3'- gGGUGC-UGgu--ACCGCG-----CACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 5805 | 0.66 | 0.874381 |
Target: 5'- gCCCACGGCguUcaauaguccggcGGCG-GUGGCCGc-- -3' miRNA: 3'- -GGGUGCUGguA------------CCGCgCACCGGUuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 91858 | 0.66 | 0.881408 |
Target: 5'- cCCUGCGACCG-GGCGacaaUGGUCGAg- -3' miRNA: 3'- -GGGUGCUGGUaCCGCgc--ACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 25145 | 0.67 | 0.859703 |
Target: 5'- gCCGaguaguUGGCCGUGaGCGaggaCGUGGCCAcgGa -3' miRNA: 3'- gGGU------GCUGGUAC-CGC----GCACCGGUuaC- -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 46612 | 0.67 | 0.852062 |
Target: 5'- uCCCGgcacCG-UCGUGGgacCGCGUGGCCGAa- -3' miRNA: 3'- -GGGU----GCuGGUACC---GCGCACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 135176 | 0.67 | 0.852062 |
Target: 5'- gCCGCGuACCucGGUccgagcgccGCGUGGCCAAa- -3' miRNA: 3'- gGGUGC-UGGuaCCG---------CGCACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 42608 | 0.67 | 0.852062 |
Target: 5'- cCCCGCaGCCAUGGCcGCGgacGCCc--- -3' miRNA: 3'- -GGGUGcUGGUACCG-CGCac-CGGuuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 32060 | 0.67 | 0.859703 |
Target: 5'- cUCUugGAUagUcgGGCaGCGUGGCCAc-- -3' miRNA: 3'- -GGGugCUG--GuaCCG-CGCACCGGUuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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