miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 5' -57.1 NC_005264.1 + 48023 1.09 0.002678
Target:  5'- uCCCACGACCAUGGCGCGUGGCCAAUGc -3'
miRNA:   3'- -GGGUGCUGGUACCGCGCACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 135007 0.82 0.153996
Target:  5'- gCCGCGACaGUGGCGCGaucuaGGCCAAUGg -3'
miRNA:   3'- gGGUGCUGgUACCGCGCa----CCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 112579 0.76 0.368967
Target:  5'- cUCCGCGGCCAUGGCGUccccagaGGCCAc-- -3'
miRNA:   3'- -GGGUGCUGGUACCGCGca-----CCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 126289 0.75 0.393346
Target:  5'- --gGCGGCCAUgccgcuuucgGGCGCGcGGCCGAUGg -3'
miRNA:   3'- gggUGCUGGUA----------CCGCGCaCCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 26116 0.74 0.472393
Target:  5'- aCCgCGCGGCuCGUGGCGCG-GcGCCGAg- -3'
miRNA:   3'- -GG-GUGCUG-GUACCGCGCaC-CGGUUac -5'
24595 5' -57.1 NC_005264.1 + 1208 0.73 0.529295
Target:  5'- gUCCGCGGCCAUGGCuGCGgGGUUg--- -3'
miRNA:   3'- -GGGUGCUGGUACCG-CGCaCCGGuuac -5'
24595 5' -57.1 NC_005264.1 + 120235 0.73 0.529295
Target:  5'- gUCCGCGGCCAUGGCuGCGgGGUUg--- -3'
miRNA:   3'- -GGGUGCUGGUACCG-CGCaCCGGuuac -5'
24595 5' -57.1 NC_005264.1 + 105294 0.71 0.598542
Target:  5'- aCCUugGGgauaUCAUGGCGCcuucuGUGGCCAAc- -3'
miRNA:   3'- -GGGugCU----GGUACCGCG-----CACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 136777 0.71 0.598542
Target:  5'- gCCCAgUGAguCCuuucGGCGCGUGGCCGGg- -3'
miRNA:   3'- -GGGU-GCU--GGua--CCGCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 24176 0.71 0.605567
Target:  5'- gCUGCGGCCGcggucgguaaagucUGGCGCG-GuGCCGGUGg -3'
miRNA:   3'- gGGUGCUGGU--------------ACCGCGCaC-CGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 102863 0.71 0.608581
Target:  5'- gCUCGCGGCCAccGcCGCGUGGCUGAg- -3'
miRNA:   3'- -GGGUGCUGGUacC-GCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 154903 0.71 0.608581
Target:  5'- gCCGCGGCCGUGGacgaCGCGUGGaCGc-- -3'
miRNA:   3'- gGGUGCUGGUACC----GCGCACCgGUuac -5'
24595 5' -57.1 NC_005264.1 + 59992 0.71 0.608581
Target:  5'- gCCGCGAgCGagacGGcCGCGUGGCCGcgGc -3'
miRNA:   3'- gGGUGCUgGUa---CC-GCGCACCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 116277 0.71 0.618638
Target:  5'- aCUugGaaGCCGUGGCGCGggcGGCUAcgGc -3'
miRNA:   3'- gGGugC--UGGUACCGCGCa--CCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 97668 0.71 0.648836
Target:  5'- gCCGCGGCCAUGGCcagagaggGCGccGCCGcgGu -3'
miRNA:   3'- gGGUGCUGGUACCG--------CGCacCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 37979 0.7 0.658887
Target:  5'- aCCGCGGCCA-GGCGaGUGGCg---- -3'
miRNA:   3'- gGGUGCUGGUaCCGCgCACCGguuac -5'
24595 5' -57.1 NC_005264.1 + 136725 0.7 0.658887
Target:  5'- gCCCGCG-CCAcgagccGCGCgGUGGCCAGUu -3'
miRNA:   3'- -GGGUGCuGGUac----CGCG-CACCGGUUAc -5'
24595 5' -57.1 NC_005264.1 + 157006 0.7 0.658887
Target:  5'- aCCGCGGCCA-GGCGaGUGGCg---- -3'
miRNA:   3'- gGGUGCUGGUaCCGCgCACCGguuac -5'
24595 5' -57.1 NC_005264.1 + 148618 0.7 0.658887
Target:  5'- aCCGaaGCuCAUGGCGUuguuuuccgccGUGGCCGAUGg -3'
miRNA:   3'- gGGUgcUG-GUACCGCG-----------CACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 69851 0.7 0.668917
Target:  5'- gCUACGGCCGgugcugcGGCGCGUGGUgAu-- -3'
miRNA:   3'- gGGUGCUGGUa------CCGCGCACCGgUuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.