miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 5' -57.1 NC_005264.1 + 97526 0.7 0.668917
Target:  5'- gCCGCGGCUGUGGCGUGgcagcGGgCAAg- -3'
miRNA:   3'- gGGUGCUGGUACCGCGCa----CCgGUUac -5'
24595 5' -57.1 NC_005264.1 + 74487 0.7 0.668917
Target:  5'- cCCCAUGucuaCGUGGCuGCGcGGCUGGUGg -3'
miRNA:   3'- -GGGUGCug--GUACCG-CGCaCCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 42066 0.7 0.678918
Target:  5'- gCCCGCGGCgCGUGGCGUcagcUGcGCCGGg- -3'
miRNA:   3'- -GGGUGCUG-GUACCGCGc---AC-CGGUUac -5'
24595 5' -57.1 NC_005264.1 + 104856 0.7 0.678918
Target:  5'- gCCACGGCCGccGCGCGgGGacuCCGAUGa -3'
miRNA:   3'- gGGUGCUGGUacCGCGCaCC---GGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 105602 0.7 0.688882
Target:  5'- cCUCAaGACCGUGGUGCGUgggaaauugaGGCCGu-- -3'
miRNA:   3'- -GGGUgCUGGUACCGCGCA----------CCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 97993 0.7 0.692856
Target:  5'- aCCCGCGcACCGgggauccaguacgcaUGGUGC-UGGCCGAc- -3'
miRNA:   3'- -GGGUGC-UGGU---------------ACCGCGcACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 116417 0.7 0.704726
Target:  5'- gCCCGCGGCaggucgcugggGGCGUcUGGCCGcgGg -3'
miRNA:   3'- -GGGUGCUGgua--------CCGCGcACCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 60396 0.7 0.708665
Target:  5'- cCCCACGGC---GGCGUGaagGGCCAGg- -3'
miRNA:   3'- -GGGUGCUGguaCCGCGCa--CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 21715 0.69 0.722367
Target:  5'- aCCC-CGGCCGU-GCGCGcaggaguagagguuuUGGCCAAg- -3'
miRNA:   3'- -GGGuGCUGGUAcCGCGC---------------ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 93687 0.69 0.737846
Target:  5'- aCCGCGcuuACCGUGGCaguaGCGcgGGCCAc-- -3'
miRNA:   3'- gGGUGC---UGGUACCG----CGCa-CCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 2675 0.69 0.737846
Target:  5'- gCCC-CGACCGcgagGGCaGCGUGGUgGcgGa -3'
miRNA:   3'- -GGGuGCUGGUa---CCG-CGCACCGgUuaC- -5'
24595 5' -57.1 NC_005264.1 + 121702 0.69 0.737846
Target:  5'- gCCC-CGACCGcgagGGCaGCGUGGUgGcgGa -3'
miRNA:   3'- -GGGuGCUGGUa---CCG-CGCACCGgUuaC- -5'
24595 5' -57.1 NC_005264.1 + 103063 0.69 0.737846
Target:  5'- -aCACGGCCGUGGacaGCcacGGCCAGUu -3'
miRNA:   3'- ggGUGCUGGUACCg--CGca-CCGGUUAc -5'
24595 5' -57.1 NC_005264.1 + 12912 0.69 0.756868
Target:  5'- cCUUGCGAUgGU-GUGCGUGGCCAucGUGg -3'
miRNA:   3'- -GGGUGCUGgUAcCGCGCACCGGU--UAC- -5'
24595 5' -57.1 NC_005264.1 + 158023 0.69 0.756868
Target:  5'- gCCCGCGugCAUuguuuCGCGUGGCUucUGa -3'
miRNA:   3'- -GGGUGCugGUAcc---GCGCACCGGuuAC- -5'
24595 5' -57.1 NC_005264.1 + 79400 0.69 0.756868
Target:  5'- gCCGCGGgCGUGGCGa--GGCCGcgGc -3'
miRNA:   3'- gGGUGCUgGUACCGCgcaCCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 74874 0.69 0.756868
Target:  5'- aCCGC-ACCGcGGUGCGUGGCUu--- -3'
miRNA:   3'- gGGUGcUGGUaCCGCGCACCGGuuac -5'
24595 5' -57.1 NC_005264.1 + 108592 0.69 0.766224
Target:  5'- uCCCAcuCGACacguUGGCGCGcggGGCCGc-- -3'
miRNA:   3'- -GGGU--GCUGgu--ACCGCGCa--CCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 149157 0.69 0.766224
Target:  5'- uCCCugGGCCAUGGCG-GUuaCCGAc- -3'
miRNA:   3'- -GGGugCUGGUACCGCgCAccGGUUac -5'
24595 5' -57.1 NC_005264.1 + 75483 0.69 0.766224
Target:  5'- -aCACGGCCAcagggaaagcgGGCGUGaGGUCAGUGa -3'
miRNA:   3'- ggGUGCUGGUa----------CCGCGCaCCGGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.