Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24595 | 5' | -57.1 | NC_005264.1 | + | 46612 | 0.67 | 0.852062 |
Target: 5'- uCCCGgcacCG-UCGUGGgacCGCGUGGCCGAa- -3' miRNA: 3'- -GGGU----GCuGGUACC---GCGCACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 42608 | 0.67 | 0.852062 |
Target: 5'- cCCCGCaGCCAUGGCcGCGgacGCCc--- -3' miRNA: 3'- -GGGUGcUGGUACCG-CGCac-CGGuuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 68968 | 0.67 | 0.844229 |
Target: 5'- gUCCGCcGCC-UGGCucgccagcuuaGCG-GGCCAGUGg -3' miRNA: 3'- -GGGUGcUGGuACCG-----------CGCaCCGGUUAC- -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 107937 | 0.67 | 0.844229 |
Target: 5'- gCCGCGACCuu--CGCGUGGaaGGUGa -3' miRNA: 3'- gGGUGCUGGuaccGCGCACCggUUAC- -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 57884 | 0.67 | 0.844229 |
Target: 5'- aCgGCGGCCAUGGCGCGgaugaaucGuaCGAUa -3' miRNA: 3'- gGgUGCUGGUACCGCGCa-------CcgGUUAc -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 62659 | 0.67 | 0.827181 |
Target: 5'- -aCGCGACCGaacucguUGGCGCGccUGGaucguCCGAUGa -3' miRNA: 3'- ggGUGCUGGU-------ACCGCGC--ACC-----GGUUAC- -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 12050 | 0.67 | 0.819639 |
Target: 5'- gCCCGCGaACCAUcccGGUGCGa-GCCAAa- -3' miRNA: 3'- -GGGUGC-UGGUA---CCGCGCacCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 131077 | 0.67 | 0.819639 |
Target: 5'- gCCCGCGaACCAUcccGGUGCGa-GCCAAa- -3' miRNA: 3'- -GGGUGC-UGGUA---CCGCGCacCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 18063 | 0.68 | 0.811102 |
Target: 5'- gCCGCGAgCCAgGGCGCGcgGGCa---- -3' miRNA: 3'- gGGUGCU-GGUaCCGCGCa-CCGguuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 8217 | 0.68 | 0.807643 |
Target: 5'- cCCCGCGGCCGcUGGUccgaguacgccagcGCGguuagucUGGCCAGc- -3' miRNA: 3'- -GGGUGCUGGU-ACCG--------------CGC-------ACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 80630 | 0.68 | 0.802408 |
Target: 5'- cCCCGagGACgAUGGaCGCGcGGCCAc-- -3' miRNA: 3'- -GGGUg-CUGgUACC-GCGCaCCGGUuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 142491 | 0.68 | 0.802408 |
Target: 5'- uCCCACGACgcuggCAcGGCGCGUuuccugcuuGCCGGUGc -3' miRNA: 3'- -GGGUGCUG-----GUaCCGCGCAc--------CGGUUAC- -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 69617 | 0.68 | 0.802408 |
Target: 5'- -aCACGAUCGUGGCGCGacuGCCc--- -3' miRNA: 3'- ggGUGCUGGUACCGCGCac-CGGuuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 44340 | 0.68 | 0.802408 |
Target: 5'- aCCGcCGACUAUGGaG-GUGGCCAGa- -3' miRNA: 3'- gGGU-GCUGGUACCgCgCACCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 87440 | 0.68 | 0.788191 |
Target: 5'- gCCCGCGGCCgcgcagacgGUGGCGCGcaccacgacuccgaaUGGaCCGu-- -3' miRNA: 3'- -GGGUGCUGG---------UACCGCGC---------------ACC-GGUuac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 47955 | 0.68 | 0.784581 |
Target: 5'- -gCACGAgCGUGGgGaagGUGGCCGAUc -3' miRNA: 3'- ggGUGCUgGUACCgCg--CACCGGUUAc -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 21943 | 0.68 | 0.784581 |
Target: 5'- gUCgGCGACUcgGGCGCaaaaGGCCAGc- -3' miRNA: 3'- -GGgUGCUGGuaCCGCGca--CCGGUUac -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 49366 | 0.68 | 0.775465 |
Target: 5'- uCgCGCGACCGUGGCacgaccGCGgGGUCGGUc -3' miRNA: 3'- -GgGUGCUGGUACCG------CGCaCCGGUUAc -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 75483 | 0.69 | 0.766224 |
Target: 5'- -aCACGGCCAcagggaaagcgGGCGUGaGGUCAGUGa -3' miRNA: 3'- ggGUGCUGGUa----------CCGCGCaCCGGUUAC- -5' |
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24595 | 5' | -57.1 | NC_005264.1 | + | 108592 | 0.69 | 0.766224 |
Target: 5'- uCCCAcuCGACacguUGGCGCGcggGGCCGc-- -3' miRNA: 3'- -GGGU--GCUGgu--ACCGCGCa--CCGGUuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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