miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 5' -57.1 NC_005264.1 + 1208 0.73 0.529295
Target:  5'- gUCCGCGGCCAUGGCuGCGgGGUUg--- -3'
miRNA:   3'- -GGGUGCUGGUACCG-CGCaCCGGuuac -5'
24595 5' -57.1 NC_005264.1 + 2675 0.69 0.737846
Target:  5'- gCCC-CGACCGcgagGGCaGCGUGGUgGcgGa -3'
miRNA:   3'- -GGGuGCUGGUa---CCG-CGCACCGgUuaC- -5'
24595 5' -57.1 NC_005264.1 + 5805 0.66 0.874381
Target:  5'- gCCCACGGCguUcaauaguccggcGGCG-GUGGCCGc-- -3'
miRNA:   3'- -GGGUGCUGguA------------CCGCgCACCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 8217 0.68 0.807643
Target:  5'- cCCCGCGGCCGcUGGUccgaguacgccagcGCGguuagucUGGCCAGc- -3'
miRNA:   3'- -GGGUGCUGGU-ACCG--------------CGC-------ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 12050 0.67 0.819639
Target:  5'- gCCCGCGaACCAUcccGGUGCGa-GCCAAa- -3'
miRNA:   3'- -GGGUGC-UGGUA---CCGCGCacCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 12912 0.69 0.756868
Target:  5'- cCUUGCGAUgGU-GUGCGUGGCCAucGUGg -3'
miRNA:   3'- -GGGUGCUGgUAcCGCGCACCGGU--UAC- -5'
24595 5' -57.1 NC_005264.1 + 16765 0.66 0.894814
Target:  5'- aCCCGCG-CgGgGGCGCGcuguucgGGCCGGa- -3'
miRNA:   3'- -GGGUGCuGgUaCCGCGCa------CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 18063 0.68 0.811102
Target:  5'- gCCGCGAgCCAgGGCGCGcgGGCa---- -3'
miRNA:   3'- gGGUGCU-GGUaCCGCGCa-CCGguuac -5'
24595 5' -57.1 NC_005264.1 + 21053 0.66 0.901187
Target:  5'- aCCuggcCGGCCuuaGCGCGuUGGCCAAg- -3'
miRNA:   3'- gGGu---GCUGGuacCGCGC-ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 21715 0.69 0.722367
Target:  5'- aCCC-CGGCCGU-GCGCGcaggaguagagguuuUGGCCAAg- -3'
miRNA:   3'- -GGGuGCUGGUAcCGCGC---------------ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 21943 0.68 0.784581
Target:  5'- gUCgGCGACUcgGGCGCaaaaGGCCAGc- -3'
miRNA:   3'- -GGgUGCUGGuaCCGCGca--CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 24176 0.71 0.605567
Target:  5'- gCUGCGGCCGcggucgguaaagucUGGCGCG-GuGCCGGUGg -3'
miRNA:   3'- gGGUGCUGGU--------------ACCGCGCaC-CGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 25145 0.67 0.859703
Target:  5'- gCCGaguaguUGGCCGUGaGCGaggaCGUGGCCAcgGa -3'
miRNA:   3'- gGGU------GCUGGUAC-CGC----GCACCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 25199 0.66 0.881408
Target:  5'- gCCGCGuACguguUGGCGCacacgGUGGCCAGg- -3'
miRNA:   3'- gGGUGC-UGgu--ACCGCG-----CACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 26116 0.74 0.472393
Target:  5'- aCCgCGCGGCuCGUGGCGCG-GcGCCGAg- -3'
miRNA:   3'- -GG-GUGCUG-GUACCGCGCaC-CGGUUac -5'
24595 5' -57.1 NC_005264.1 + 32060 0.67 0.859703
Target:  5'- cUCUugGAUagUcgGGCaGCGUGGCCAc-- -3'
miRNA:   3'- -GGGugCUG--GuaCCG-CGCACCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 33925 0.66 0.88822
Target:  5'- gCCGCcaggcugggaaGGCCGUGGCGCGccgGGaCCGc-- -3'
miRNA:   3'- gGGUG-----------CUGGUACCGCGCa--CC-GGUuac -5'
24595 5' -57.1 NC_005264.1 + 37979 0.7 0.658887
Target:  5'- aCCGCGGCCA-GGCGaGUGGCg---- -3'
miRNA:   3'- gGGUGCUGGUaCCGCgCACCGguuac -5'
24595 5' -57.1 NC_005264.1 + 42066 0.7 0.678918
Target:  5'- gCCCGCGGCgCGUGGCGUcagcUGcGCCGGg- -3'
miRNA:   3'- -GGGUGCUG-GUACCGCGc---AC-CGGUUac -5'
24595 5' -57.1 NC_005264.1 + 42608 0.67 0.852062
Target:  5'- cCCCGCaGCCAUGGCcGCGgacGCCc--- -3'
miRNA:   3'- -GGGUGcUGGUACCG-CGCac-CGGuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.