miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 5' -57.1 NC_005264.1 + 44340 0.68 0.802408
Target:  5'- aCCGcCGACUAUGGaG-GUGGCCAGa- -3'
miRNA:   3'- gGGU-GCUGGUACCgCgCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 46612 0.67 0.852062
Target:  5'- uCCCGgcacCG-UCGUGGgacCGCGUGGCCGAa- -3'
miRNA:   3'- -GGGU----GCuGGUACC---GCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 47394 0.66 0.894814
Target:  5'- --aGCGAgaGUGGCGCGUGGUUGGg- -3'
miRNA:   3'- gggUGCUggUACCGCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 47955 0.68 0.784581
Target:  5'- -gCACGAgCGUGGgGaagGUGGCCGAUc -3'
miRNA:   3'- ggGUGCUgGUACCgCg--CACCGGUUAc -5'
24595 5' -57.1 NC_005264.1 + 48023 1.09 0.002678
Target:  5'- uCCCACGACCAUGGCGCGUGGCCAAUGc -3'
miRNA:   3'- -GGGUGCUGGUACCGCGCACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 49366 0.68 0.775465
Target:  5'- uCgCGCGACCGUGGCacgaccGCGgGGUCGGUc -3'
miRNA:   3'- -GgGUGCUGGUACCG------CGCaCCGGUUAc -5'
24595 5' -57.1 NC_005264.1 + 50499 0.66 0.894165
Target:  5'- gCCACGGCCGcGGCcaguucuGCcuUGGUCGAUGu -3'
miRNA:   3'- gGGUGCUGGUaCCG-------CGc-ACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 57884 0.67 0.844229
Target:  5'- aCgGCGGCCAUGGCGCGgaugaaucGuaCGAUa -3'
miRNA:   3'- gGgUGCUGGUACCGCGCa-------CcgGUUAc -5'
24595 5' -57.1 NC_005264.1 + 57988 0.67 0.859703
Target:  5'- cCCCgcgcgGCGGCCGUGGCucagcggccccgGCGgacaGGCCGucGUGc -3'
miRNA:   3'- -GGG-----UGCUGGUACCG------------CGCa---CCGGU--UAC- -5'
24595 5' -57.1 NC_005264.1 + 59992 0.71 0.608581
Target:  5'- gCCGCGAgCGagacGGcCGCGUGGCCGcgGc -3'
miRNA:   3'- gGGUGCUgGUa---CC-GCGCACCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 60396 0.7 0.708665
Target:  5'- cCCCACGGC---GGCGUGaagGGCCAGg- -3'
miRNA:   3'- -GGGUGCUGguaCCGCGCa--CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 62659 0.67 0.827181
Target:  5'- -aCGCGACCGaacucguUGGCGCGccUGGaucguCCGAUGa -3'
miRNA:   3'- ggGUGCUGGU-------ACCGCGC--ACC-----GGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 68968 0.67 0.844229
Target:  5'- gUCCGCcGCC-UGGCucgccagcuuaGCG-GGCCAGUGg -3'
miRNA:   3'- -GGGUGcUGGuACCG-----------CGCaCCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 69617 0.68 0.802408
Target:  5'- -aCACGAUCGUGGCGCGacuGCCc--- -3'
miRNA:   3'- ggGUGCUGGUACCGCGCac-CGGuuac -5'
24595 5' -57.1 NC_005264.1 + 69851 0.7 0.668917
Target:  5'- gCUACGGCCGgugcugcGGCGCGUGGUgAu-- -3'
miRNA:   3'- gGGUGCUGGUa------CCGCGCACCGgUuac -5'
24595 5' -57.1 NC_005264.1 + 74487 0.7 0.668917
Target:  5'- cCCCAUGucuaCGUGGCuGCGcGGCUGGUGg -3'
miRNA:   3'- -GGGUGCug--GUACCG-CGCaCCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 74874 0.69 0.756868
Target:  5'- aCCGC-ACCGcGGUGCGUGGCUu--- -3'
miRNA:   3'- gGGUGcUGGUaCCGCGCACCGGuuac -5'
24595 5' -57.1 NC_005264.1 + 75483 0.69 0.766224
Target:  5'- -aCACGGCCAcagggaaagcgGGCGUGaGGUCAGUGa -3'
miRNA:   3'- ggGUGCUGGUa----------CCGCGCaCCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 79400 0.69 0.756868
Target:  5'- gCCGCGGgCGUGGCGa--GGCCGcgGc -3'
miRNA:   3'- gGGUGCUgGUACCGCgcaCCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 79723 0.66 0.874381
Target:  5'- cUCCGCGGCCuUGGCGCccGUcGGCg---- -3'
miRNA:   3'- -GGGUGCUGGuACCGCG--CA-CCGguuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.