miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 5' -57.1 NC_005264.1 + 161635 0.67 0.852062
Target:  5'- cCCCGCaGCCAUGGCcGCGgacGCCc--- -3'
miRNA:   3'- -GGGUGcUGGUACCG-CGCac-CGGuuac -5'
24595 5' -57.1 NC_005264.1 + 158023 0.69 0.756868
Target:  5'- gCCCGCGugCAUuguuuCGCGUGGCUucUGa -3'
miRNA:   3'- -GGGUGCugGUAcc---GCGCACCGGuuAC- -5'
24595 5' -57.1 NC_005264.1 + 157006 0.7 0.658887
Target:  5'- aCCGCGGCCA-GGCGaGUGGCg---- -3'
miRNA:   3'- gGGUGCUGGUaCCGCgCACCGguuac -5'
24595 5' -57.1 NC_005264.1 + 154903 0.71 0.608581
Target:  5'- gCCGCGGCCGUGGacgaCGCGUGGaCGc-- -3'
miRNA:   3'- gGGUGCUGGUACC----GCGCACCgGUuac -5'
24595 5' -57.1 NC_005264.1 + 152951 0.66 0.894814
Target:  5'- gCCGCcagggcugggaaGGCCGUGGCGCGccgGGaCCGc-- -3'
miRNA:   3'- gGGUG------------CUGGUACCGCGCa--CC-GGUuac -5'
24595 5' -57.1 NC_005264.1 + 149241 0.66 0.88822
Target:  5'- gUCGCuGGCCgguGUGGCGCuggGGCCGAa- -3'
miRNA:   3'- gGGUG-CUGG---UACCGCGca-CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 149157 0.69 0.766224
Target:  5'- uCCCugGGCCAUGGCG-GUuaCCGAc- -3'
miRNA:   3'- -GGGugCUGGUACCGCgCAccGGUUac -5'
24595 5' -57.1 NC_005264.1 + 148618 0.7 0.658887
Target:  5'- aCCGaaGCuCAUGGCGUuguuuuccgccGUGGCCGAUGg -3'
miRNA:   3'- gGGUgcUG-GUACCGCG-----------CACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 142491 0.68 0.802408
Target:  5'- uCCCACGACgcuggCAcGGCGCGUuuccugcuuGCCGGUGc -3'
miRNA:   3'- -GGGUGCUG-----GUaCCGCGCAc--------CGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 136777 0.71 0.598542
Target:  5'- gCCCAgUGAguCCuuucGGCGCGUGGCCGGg- -3'
miRNA:   3'- -GGGU-GCU--GGua--CCGCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 136725 0.7 0.658887
Target:  5'- gCCCGCG-CCAcgagccGCGCgGUGGCCAGUu -3'
miRNA:   3'- -GGGUGCuGGUac----CGCG-CACCGGUUAc -5'
24595 5' -57.1 NC_005264.1 + 135176 0.67 0.852062
Target:  5'- gCCGCGuACCucGGUccgagcgccGCGUGGCCAAa- -3'
miRNA:   3'- gGGUGC-UGGuaCCG---------CGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 135007 0.82 0.153996
Target:  5'- gCCGCGACaGUGGCGCGaucuaGGCCAAUGg -3'
miRNA:   3'- gGGUGCUGgUACCGCGCa----CCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 131077 0.67 0.819639
Target:  5'- gCCCGCGaACCAUcccGGUGCGa-GCCAAa- -3'
miRNA:   3'- -GGGUGC-UGGUA---CCGCGCacCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 126289 0.75 0.393346
Target:  5'- --gGCGGCCAUgccgcuuucgGGCGCGcGGCCGAUGg -3'
miRNA:   3'- gggUGCUGGUA----------CCGCGCaCCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 124831 0.66 0.874381
Target:  5'- gCCCACGGCguUcaauaguccggcGGCG-GUGGCCGc-- -3'
miRNA:   3'- -GGGUGCUGguA------------CCGCgCACCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 121702 0.69 0.737846
Target:  5'- gCCC-CGACCGcgagGGCaGCGUGGUgGcgGa -3'
miRNA:   3'- -GGGuGCUGGUa---CCG-CGCACCGgUuaC- -5'
24595 5' -57.1 NC_005264.1 + 120235 0.73 0.529295
Target:  5'- gUCCGCGGCCAUGGCuGCGgGGUUg--- -3'
miRNA:   3'- -GGGUGCUGGUACCG-CGCaCCGGuuac -5'
24595 5' -57.1 NC_005264.1 + 116417 0.7 0.704726
Target:  5'- gCCCGCGGCaggucgcugggGGCGUcUGGCCGcgGg -3'
miRNA:   3'- -GGGUGCUGgua--------CCGCGcACCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 116277 0.71 0.618638
Target:  5'- aCUugGaaGCCGUGGCGCGggcGGCUAcgGc -3'
miRNA:   3'- gGGugC--UGGUACCGCGCa--CCGGUuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.