miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 5' -57.1 NC_005264.1 + 48023 1.09 0.002678
Target:  5'- uCCCACGACCAUGGCGCGUGGCCAAUGc -3'
miRNA:   3'- -GGGUGCUGGUACCGCGCACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 12912 0.69 0.756868
Target:  5'- cCUUGCGAUgGU-GUGCGUGGCCAucGUGg -3'
miRNA:   3'- -GGGUGCUGgUAcCGCGCACCGGU--UAC- -5'
24595 5' -57.1 NC_005264.1 + 108592 0.69 0.766224
Target:  5'- uCCCAcuCGACacguUGGCGCGcggGGCCGc-- -3'
miRNA:   3'- -GGGU--GCUGgu--ACCGCGCa--CCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 21053 0.66 0.901187
Target:  5'- aCCuggcCGGCCuuaGCGCGuUGGCCAAg- -3'
miRNA:   3'- gGGu---GCUGGuacCGCGC-ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 136777 0.71 0.598542
Target:  5'- gCCCAgUGAguCCuuucGGCGCGUGGCCGGg- -3'
miRNA:   3'- -GGGU-GCU--GGua--CCGCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 24176 0.71 0.605567
Target:  5'- gCUGCGGCCGcggucgguaaagucUGGCGCG-GuGCCGGUGg -3'
miRNA:   3'- gGGUGCUGGU--------------ACCGCGCaC-CGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 148618 0.7 0.658887
Target:  5'- aCCGaaGCuCAUGGCGUuguuuuccgccGUGGCCGAUGg -3'
miRNA:   3'- gGGUgcUG-GUACCGCG-----------CACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 157006 0.7 0.658887
Target:  5'- aCCGCGGCCA-GGCGaGUGGCg---- -3'
miRNA:   3'- gGGUGCUGGUaCCGCgCACCGguuac -5'
24595 5' -57.1 NC_005264.1 + 97993 0.7 0.692856
Target:  5'- aCCCGCGcACCGgggauccaguacgcaUGGUGC-UGGCCGAc- -3'
miRNA:   3'- -GGGUGC-UGGU---------------ACCGCGcACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 121702 0.69 0.737846
Target:  5'- gCCC-CGACCGcgagGGCaGCGUGGUgGcgGa -3'
miRNA:   3'- -GGGuGCUGGUa---CCG-CGCACCGgUuaC- -5'
24595 5' -57.1 NC_005264.1 + 60396 0.7 0.708665
Target:  5'- cCCCACGGC---GGCGUGaagGGCCAGg- -3'
miRNA:   3'- -GGGUGCUGguaCCGCGCa--CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 105602 0.7 0.688882
Target:  5'- cCUCAaGACCGUGGUGCGUgggaaauugaGGCCGu-- -3'
miRNA:   3'- -GGGUgCUGGUACCGCGCA----------CCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 26116 0.74 0.472393
Target:  5'- aCCgCGCGGCuCGUGGCGCG-GcGCCGAg- -3'
miRNA:   3'- -GG-GUGCUG-GUACCGCGCaC-CGGUUac -5'
24595 5' -57.1 NC_005264.1 + 21715 0.69 0.722367
Target:  5'- aCCC-CGGCCGU-GCGCGcaggaguagagguuuUGGCCAAg- -3'
miRNA:   3'- -GGGuGCUGGUAcCGCGC---------------ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 120235 0.73 0.529295
Target:  5'- gUCCGCGGCCAUGGCuGCGgGGUUg--- -3'
miRNA:   3'- -GGGUGCUGGUACCG-CGCaCCGGuuac -5'
24595 5' -57.1 NC_005264.1 + 42066 0.7 0.678918
Target:  5'- gCCCGCGGCgCGUGGCGUcagcUGcGCCGGg- -3'
miRNA:   3'- -GGGUGCUG-GUACCGCGc---AC-CGGUUac -5'
24595 5' -57.1 NC_005264.1 + 93687 0.69 0.737846
Target:  5'- aCCGCGcuuACCGUGGCaguaGCGcgGGCCAc-- -3'
miRNA:   3'- gGGUGC---UGGUACCG----CGCa-CCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 75483 0.69 0.766224
Target:  5'- -aCACGGCCAcagggaaagcgGGCGUGaGGUCAGUGa -3'
miRNA:   3'- ggGUGCUGGUa----------CCGCGCaCCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 105294 0.71 0.598542
Target:  5'- aCCUugGGgauaUCAUGGCGCcuucuGUGGCCAAc- -3'
miRNA:   3'- -GGGugCU----GGUACCGCG-----CACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 59992 0.71 0.608581
Target:  5'- gCCGCGAgCGagacGGcCGCGUGGCCGcgGc -3'
miRNA:   3'- gGGUGCUgGUa---CC-GCGCACCGGUuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.