miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 5' -57.1 NC_005264.1 + 87440 0.68 0.788191
Target:  5'- gCCCGCGGCCgcgcagacgGUGGCGCGcaccacgacuccgaaUGGaCCGu-- -3'
miRNA:   3'- -GGGUGCUGG---------UACCGCGC---------------ACC-GGUuac -5'
24595 5' -57.1 NC_005264.1 + 47955 0.68 0.784581
Target:  5'- -gCACGAgCGUGGgGaagGUGGCCGAUc -3'
miRNA:   3'- ggGUGCUgGUACCgCg--CACCGGUUAc -5'
24595 5' -57.1 NC_005264.1 + 93687 0.69 0.737846
Target:  5'- aCCGCGcuuACCGUGGCaguaGCGcgGGCCAc-- -3'
miRNA:   3'- gGGUGC---UGGUACCG----CGCa-CCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 157006 0.7 0.658887
Target:  5'- aCCGCGGCCA-GGCGaGUGGCg---- -3'
miRNA:   3'- gGGUGCUGGUaCCGCgCACCGguuac -5'
24595 5' -57.1 NC_005264.1 + 124831 0.66 0.874381
Target:  5'- gCCCACGGCguUcaauaguccggcGGCG-GUGGCCGc-- -3'
miRNA:   3'- -GGGUGCUGguA------------CCGCgCACCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 161635 0.67 0.852062
Target:  5'- cCCCGCaGCCAUGGCcGCGgacGCCc--- -3'
miRNA:   3'- -GGGUGcUGGUACCG-CGCac-CGGuuac -5'
24595 5' -57.1 NC_005264.1 + 108592 0.69 0.766224
Target:  5'- uCCCAcuCGACacguUGGCGCGcggGGCCGc-- -3'
miRNA:   3'- -GGGU--GCUGgu--ACCGCGCa--CCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 148618 0.7 0.658887
Target:  5'- aCCGaaGCuCAUGGCGUuguuuuccgccGUGGCCGAUGg -3'
miRNA:   3'- gGGUgcUG-GUACCGCG-----------CACCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 107937 0.67 0.844229
Target:  5'- gCCGCGACCuu--CGCGUGGaaGGUGa -3'
miRNA:   3'- gGGUGCUGGuaccGCGCACCggUUAC- -5'
24595 5' -57.1 NC_005264.1 + 59992 0.71 0.608581
Target:  5'- gCCGCGAgCGagacGGcCGCGUGGCCGcgGc -3'
miRNA:   3'- gGGUGCUgGUa---CC-GCGCACCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 21943 0.68 0.784581
Target:  5'- gUCgGCGACUcgGGCGCaaaaGGCCAGc- -3'
miRNA:   3'- -GGgUGCUGGuaCCGCGca--CCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 8217 0.68 0.807643
Target:  5'- cCCCGCGGCCGcUGGUccgaguacgccagcGCGguuagucUGGCCAGc- -3'
miRNA:   3'- -GGGUGCUGGU-ACCG--------------CGC-------ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 75483 0.69 0.766224
Target:  5'- -aCACGGCCAcagggaaagcgGGCGUGaGGUCAGUGa -3'
miRNA:   3'- ggGUGCUGGUa----------CCGCGCaCCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 121702 0.69 0.737846
Target:  5'- gCCC-CGACCGcgagGGCaGCGUGGUgGcgGa -3'
miRNA:   3'- -GGGuGCUGGUa---CCG-CGCACCGgUuaC- -5'
24595 5' -57.1 NC_005264.1 + 116417 0.7 0.704726
Target:  5'- gCCCGCGGCaggucgcugggGGCGUcUGGCCGcgGg -3'
miRNA:   3'- -GGGUGCUGgua--------CCGCGcACCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 42066 0.7 0.678918
Target:  5'- gCCCGCGGCgCGUGGCGUcagcUGcGCCGGg- -3'
miRNA:   3'- -GGGUGCUG-GUACCGCGc---AC-CGGUUac -5'
24595 5' -57.1 NC_005264.1 + 47394 0.66 0.894814
Target:  5'- --aGCGAgaGUGGCGCGUGGUUGGg- -3'
miRNA:   3'- gggUGCUggUACCGCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 91858 0.66 0.881408
Target:  5'- cCCUGCGACCG-GGCGacaaUGGUCGAg- -3'
miRNA:   3'- -GGGUGCUGGUaCCGCgc--ACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 79899 0.66 0.867144
Target:  5'- gCCugGuCUuUGcguGCGCGUGGCCGAc- -3'
miRNA:   3'- gGGugCuGGuAC---CGCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 135176 0.67 0.852062
Target:  5'- gCCGCGuACCucGGUccgagcgccGCGUGGCCAAa- -3'
miRNA:   3'- gGGUGC-UGGuaCCG---------CGCACCGGUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.