miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24595 5' -57.1 NC_005264.1 + 2675 0.69 0.737846
Target:  5'- gCCC-CGACCGcgagGGCaGCGUGGUgGcgGa -3'
miRNA:   3'- -GGGuGCUGGUa---CCG-CGCACCGgUuaC- -5'
24595 5' -57.1 NC_005264.1 + 142491 0.68 0.802408
Target:  5'- uCCCACGACgcuggCAcGGCGCGUuuccugcuuGCCGGUGc -3'
miRNA:   3'- -GGGUGCUG-----GUaCCGCGCAc--------CGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 69617 0.68 0.802408
Target:  5'- -aCACGAUCGUGGCGCGacuGCCc--- -3'
miRNA:   3'- ggGUGCUGGUACCGCGCac-CGGuuac -5'
24595 5' -57.1 NC_005264.1 + 44340 0.68 0.802408
Target:  5'- aCCGcCGACUAUGGaG-GUGGCCAGa- -3'
miRNA:   3'- gGGU-GCUGGUACCgCgCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 49366 0.68 0.775465
Target:  5'- uCgCGCGACCGUGGCacgaccGCGgGGUCGGUc -3'
miRNA:   3'- -GgGUGCUGGUACCG------CGCaCCGGUUAc -5'
24595 5' -57.1 NC_005264.1 + 149157 0.69 0.766224
Target:  5'- uCCCugGGCCAUGGCG-GUuaCCGAc- -3'
miRNA:   3'- -GGGugCUGGUACCGCgCAccGGUUac -5'
24595 5' -57.1 NC_005264.1 + 158023 0.69 0.756868
Target:  5'- gCCCGCGugCAUuguuuCGCGUGGCUucUGa -3'
miRNA:   3'- -GGGUGCugGUAcc---GCGCACCGGuuAC- -5'
24595 5' -57.1 NC_005264.1 + 79400 0.69 0.756868
Target:  5'- gCCGCGGgCGUGGCGa--GGCCGcgGc -3'
miRNA:   3'- gGGUGCUgGUACCGCgcaCCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 74874 0.69 0.756868
Target:  5'- aCCGC-ACCGcGGUGCGUGGCUu--- -3'
miRNA:   3'- gGGUGcUGGUaCCGCGCACCGGuuac -5'
24595 5' -57.1 NC_005264.1 + 80630 0.68 0.802408
Target:  5'- cCCCGagGACgAUGGaCGCGcGGCCAc-- -3'
miRNA:   3'- -GGGUg-CUGgUACC-GCGCaCCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 12050 0.67 0.819639
Target:  5'- gCCCGCGaACCAUcccGGUGCGa-GCCAAa- -3'
miRNA:   3'- -GGGUGC-UGGUA---CCGCGCacCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 62659 0.67 0.827181
Target:  5'- -aCGCGACCGaacucguUGGCGCGccUGGaucguCCGAUGa -3'
miRNA:   3'- ggGUGCUGGU-------ACCGCGC--ACC-----GGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 33925 0.66 0.88822
Target:  5'- gCCGCcaggcugggaaGGCCGUGGCGCGccgGGaCCGc-- -3'
miRNA:   3'- gGGUG-----------CUGGUACCGCGCa--CC-GGUuac -5'
24595 5' -57.1 NC_005264.1 + 25199 0.66 0.881408
Target:  5'- gCCGCGuACguguUGGCGCacacgGUGGCCAGg- -3'
miRNA:   3'- gGGUGC-UGgu--ACCGCG-----CACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 5805 0.66 0.874381
Target:  5'- gCCCACGGCguUcaauaguccggcGGCG-GUGGCCGc-- -3'
miRNA:   3'- -GGGUGCUGguA------------CCGCgCACCGGUuac -5'
24595 5' -57.1 NC_005264.1 + 25145 0.67 0.859703
Target:  5'- gCCGaguaguUGGCCGUGaGCGaggaCGUGGCCAcgGa -3'
miRNA:   3'- gGGU------GCUGGUAC-CGC----GCACCGGUuaC- -5'
24595 5' -57.1 NC_005264.1 + 46612 0.67 0.852062
Target:  5'- uCCCGgcacCG-UCGUGGgacCGCGUGGCCGAa- -3'
miRNA:   3'- -GGGU----GCuGGUACC---GCGCACCGGUUac -5'
24595 5' -57.1 NC_005264.1 + 42608 0.67 0.852062
Target:  5'- cCCCGCaGCCAUGGCcGCGgacGCCc--- -3'
miRNA:   3'- -GGGUGcUGGUACCG-CGCac-CGGuuac -5'
24595 5' -57.1 NC_005264.1 + 68968 0.67 0.844229
Target:  5'- gUCCGCcGCC-UGGCucgccagcuuaGCG-GGCCAGUGg -3'
miRNA:   3'- -GGGUGcUGGuACCG-----------CGCaCCGGUUAC- -5'
24595 5' -57.1 NC_005264.1 + 57884 0.67 0.844229
Target:  5'- aCgGCGGCCAUGGCGCGgaugaaucGuaCGAUa -3'
miRNA:   3'- gGgUGCUGGUACCGCGCa-------CcgGUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.