Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24597 | 3' | -62.7 | NC_005264.1 | + | 110903 | 0.66 | 0.704642 |
Target: 5'- --aGCGGCacccUCGCcaaGCUCGGCgCGGa -3' miRNA: 3'- gggCGCCGaca-AGCG---CGAGCCGgGCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 150955 | 0.66 | 0.695243 |
Target: 5'- uCCCaCGGCcc-UCGCgGCUCGGCUCu- -3' miRNA: 3'- -GGGcGCCGacaAGCG-CGAGCCGGGcc -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 138522 | 0.66 | 0.695243 |
Target: 5'- aCUGCGGCcccUUCaaCGCUCGGCaCCGu -3' miRNA: 3'- gGGCGCCGac-AAGc-GCGAGCCG-GGCc -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 23045 | 0.66 | 0.695243 |
Target: 5'- gCCGaCGGCacgcGUUCGUGCUUG-CuuGGg -3' miRNA: 3'- gGGC-GCCGa---CAAGCGCGAGCcGggCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 149879 | 0.66 | 0.695243 |
Target: 5'- gUCgGCGGCgg--CGCGC-CG-CCCGGu -3' miRNA: 3'- -GGgCGCCGacaaGCGCGaGCcGGGCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 30853 | 0.66 | 0.695243 |
Target: 5'- gUCgGCGGCgg--CGCGC-CG-CCCGGu -3' miRNA: 3'- -GGgCGCCGacaaGCGCGaGCcGGGCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 158172 | 0.66 | 0.694301 |
Target: 5'- cCCCGacgcaGGUauucccUGaUCGUGCUcguguccgagaagCGGCCCGGc -3' miRNA: 3'- -GGGCg----CCG------ACaAGCGCGA-------------GCCGGGCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 39145 | 0.66 | 0.694301 |
Target: 5'- cCCCGacgcaGGUauucccUGaUCGUGCUcguguccgagaagCGGCCCGGc -3' miRNA: 3'- -GGGCg----CCG------ACaAGCGCGA-------------GCCGGGCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 113001 | 0.66 | 0.686745 |
Target: 5'- gCUGCGGCguacGUgcUCGCGCacaaaaaagaauacgCGGCCCu- -3' miRNA: 3'- gGGCGCCGa---CA--AGCGCGa--------------GCCGGGcc -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 127877 | 0.66 | 0.685799 |
Target: 5'- gUCGCGaGCg--UCGCucuaaguacucGCUCGGCCCa- -3' miRNA: 3'- gGGCGC-CGacaAGCG-----------CGAGCCGGGcc -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 34632 | 0.66 | 0.685799 |
Target: 5'- gCCCGCgGGgUGUUCGCGgCcacCGGUCgCGa -3' miRNA: 3'- -GGGCG-CCgACAAGCGC-Ga--GCCGG-GCc -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 70581 | 0.66 | 0.685799 |
Target: 5'- -aCGUGGCgaagagCGCGCUUGGCgaGGc -3' miRNA: 3'- ggGCGCCGacaa--GCGCGAGCCGggCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 146777 | 0.66 | 0.685799 |
Target: 5'- gCCgCGCGGCgGUUCucgGUGCggCGGUgUGGa -3' miRNA: 3'- -GG-GCGCCGaCAAG---CGCGa-GCCGgGCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 159244 | 0.66 | 0.685799 |
Target: 5'- cCCCGCGGCgGUaauucuUCGCGCcu--CCUGGc -3' miRNA: 3'- -GGGCGCCGaCA------AGCGCGagccGGGCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 40217 | 0.66 | 0.685799 |
Target: 5'- cCCCGCGGCgGUaauucuUCGCGCcu--CCUGGc -3' miRNA: 3'- -GGGCGCCGaCA------AGCGCGagccGGGCC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 8851 | 0.66 | 0.685799 |
Target: 5'- gUCGCGaGCg--UCGCucuaaguacucGCUCGGCCCa- -3' miRNA: 3'- gGGCGC-CGacaAGCG-----------CGAGCCGGGcc -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 27893 | 0.66 | 0.685799 |
Target: 5'- gCCCGCguuGGCU-UUCGUGCagaUCGGCCg-- -3' miRNA: 3'- -GGGCG---CCGAcAAGCGCG---AGCCGGgcc -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 142275 | 0.66 | 0.680113 |
Target: 5'- aCCCGCGcGCUGgcagagcgcgauacaUaucUCGCGCuucuUCGuGCCCGc -3' miRNA: 3'- -GGGCGC-CGAC---------------A---AGCGCG----AGC-CGGGCc -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 7657 | 0.66 | 0.676315 |
Target: 5'- gCCUGcCGGCUcGga-GgGCUCGGCCUccauGGg -3' miRNA: 3'- -GGGC-GCCGA-CaagCgCGAGCCGGG----CC- -5' |
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24597 | 3' | -62.7 | NC_005264.1 | + | 146418 | 0.66 | 0.676315 |
Target: 5'- cCCCGCGGCag-UCGag--CGGCCCu- -3' miRNA: 3'- -GGGCGCCGacaAGCgcgaGCCGGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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