miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24597 3' -62.7 NC_005264.1 + 110903 0.66 0.704642
Target:  5'- --aGCGGCacccUCGCcaaGCUCGGCgCGGa -3'
miRNA:   3'- gggCGCCGaca-AGCG---CGAGCCGgGCC- -5'
24597 3' -62.7 NC_005264.1 + 78508 0.66 0.647703
Target:  5'- -aCGCGGUgaggccaGUaaccaUCGCGC-CGuGCCCGGu -3'
miRNA:   3'- ggGCGCCGa------CA-----AGCGCGaGC-CGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 98740 0.66 0.647703
Target:  5'- aCUGaauCUGUUUGCGUUagUGGCCCGGa -3'
miRNA:   3'- gGGCgccGACAAGCGCGA--GCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 142275 0.66 0.680113
Target:  5'- aCCCGCGcGCUGgcagagcgcgauacaUaucUCGCGCuucuUCGuGCCCGc -3'
miRNA:   3'- -GGGCGC-CGAC---------------A---AGCGCG----AGC-CGGGCc -5'
24597 3' -62.7 NC_005264.1 + 150955 0.66 0.695243
Target:  5'- uCCCaCGGCcc-UCGCgGCUCGGCUCu- -3'
miRNA:   3'- -GGGcGCCGacaAGCG-CGAGCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 42066 0.66 0.6668
Target:  5'- gCCCGCGGCgcgUgGCGUcagCuGCgCCGGg -3'
miRNA:   3'- -GGGCGCCGacaAgCGCGa--GcCG-GGCC- -5'
24597 3' -62.7 NC_005264.1 + 55142 0.66 0.6668
Target:  5'- gCCGUGcGCUGUgcuggCGCaGCguaugCGGCCUcuGGg -3'
miRNA:   3'- gGGCGC-CGACAa----GCG-CGa----GCCGGG--CC- -5'
24597 3' -62.7 NC_005264.1 + 67375 0.66 0.6668
Target:  5'- gCCCGCGcucGCUGcgCcCGC-CGGCgCGGu -3'
miRNA:   3'- -GGGCGC---CGACaaGcGCGaGCCGgGCC- -5'
24597 3' -62.7 NC_005264.1 + 126684 0.66 0.676315
Target:  5'- gCCUGcCGGCUcGga-GgGCUCGGCCUccauGGg -3'
miRNA:   3'- -GGGC-GCCGA-CaagCgCGAGCCGGG----CC- -5'
24597 3' -62.7 NC_005264.1 + 79417 0.66 0.65535
Target:  5'- gCCGCGGCggaacccaGCGUgggCGGUgCGGg -3'
miRNA:   3'- gGGCGCCGacaag---CGCGa--GCCGgGCC- -5'
24597 3' -62.7 NC_005264.1 + 87718 0.66 0.65726
Target:  5'- aCgCGCGGCcauuUGacugCGCcccaGCUCGGCgCCGGc -3'
miRNA:   3'- -GgGCGCCG----ACaa--GCG----CGAGCCG-GGCC- -5'
24597 3' -62.7 NC_005264.1 + 26273 0.66 0.6668
Target:  5'- uUCCGCGGCgcguuccugGaUCGCGaUCGGCUCc- -3'
miRNA:   3'- -GGGCGCCGa--------CaAGCGCgAGCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 30853 0.66 0.695243
Target:  5'- gUCgGCGGCgg--CGCGC-CG-CCCGGu -3'
miRNA:   3'- -GGgCGCCGacaaGCGCGaGCcGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 39145 0.66 0.694301
Target:  5'- cCCCGacgcaGGUauucccUGaUCGUGCUcguguccgagaagCGGCCCGGc -3'
miRNA:   3'- -GGGCg----CCG------ACaAGCGCGA-------------GCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 113001 0.66 0.686745
Target:  5'- gCUGCGGCguacGUgcUCGCGCacaaaaaagaauacgCGGCCCu- -3'
miRNA:   3'- gGGCGCCGa---CA--AGCGCGa--------------GCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 40217 0.66 0.685799
Target:  5'- cCCCGCGGCgGUaauucuUCGCGCcu--CCUGGc -3'
miRNA:   3'- -GGGCGCCGaCA------AGCGCGagccGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 27893 0.66 0.685799
Target:  5'- gCCCGCguuGGCU-UUCGUGCagaUCGGCCg-- -3'
miRNA:   3'- -GGGCG---CCGAcAAGCGCG---AGCCGGgcc -5'
24597 3' -62.7 NC_005264.1 + 8851 0.66 0.685799
Target:  5'- gUCGCGaGCg--UCGCucuaaguacucGCUCGGCCCa- -3'
miRNA:   3'- gGGCGC-CGacaAGCG-----------CGAGCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 146418 0.66 0.676315
Target:  5'- cCCCGCGGCag-UCGag--CGGCCCu- -3'
miRNA:   3'- -GGGCGCCGacaAGCgcgaGCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 7657 0.66 0.676315
Target:  5'- gCCUGcCGGCUcGga-GgGCUCGGCCUccauGGg -3'
miRNA:   3'- -GGGC-GCCGA-CaagCgCGAGCCGGG----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.