miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24597 3' -62.7 NC_005264.1 + 49328 1.11 0.000733
Target:  5'- uCCCGCGGCUGUUCGCGCUCGGCCCGGa -3'
miRNA:   3'- -GGGCGCCGACAAGCGCGAGCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 82337 0.74 0.258587
Target:  5'- aCCGCGGCgaUGUucUCGCuCUCGGCCUuGGc -3'
miRNA:   3'- gGGCGCCG--ACA--AGCGcGAGCCGGG-CC- -5'
24597 3' -62.7 NC_005264.1 + 41308 0.73 0.288779
Target:  5'- cCCCGC-GCUGaagUCGCGCgaGGCCCGc -3'
miRNA:   3'- -GGGCGcCGACa--AGCGCGagCCGGGCc -5'
24597 3' -62.7 NC_005264.1 + 160335 0.73 0.288779
Target:  5'- cCCCGC-GCUGaagUCGCGCgaGGCCCGc -3'
miRNA:   3'- -GGGCGcCGACa--AGCGCGagCCGGGCc -5'
24597 3' -62.7 NC_005264.1 + 128463 0.73 0.301609
Target:  5'- gCCCGUcuuuGGCgucggcaaGUUCGCGCUUGGCCgCGu -3'
miRNA:   3'- -GGGCG----CCGa-------CAAGCGCGAGCCGG-GCc -5'
24597 3' -62.7 NC_005264.1 + 17737 0.73 0.32373
Target:  5'- gCCGCGGCgcaaccuaugccaaGUUCGCggcaaggagagcuGCcCGGCCCGGc -3'
miRNA:   3'- gGGCGCCGa-------------CAAGCG-------------CGaGCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 68181 0.72 0.328575
Target:  5'- gCCGCGGCUacGUUUGgGCUUGGUuaGGu -3'
miRNA:   3'- gGGCGCCGA--CAAGCgCGAGCCGggCC- -5'
24597 3' -62.7 NC_005264.1 + 32 0.72 0.35507
Target:  5'- gCCGCGGCccuagcUGUUCGaacgagcgcuuauuUGCUCGGUCaCGGa -3'
miRNA:   3'- gGGCGCCG------ACAAGC--------------GCGAGCCGG-GCC- -5'
24597 3' -62.7 NC_005264.1 + 30432 0.72 0.364729
Target:  5'- gCCGCGGCuUGUagcUCGUGCcugCGGCCaCGu -3'
miRNA:   3'- gGGCGCCG-ACA---AGCGCGa--GCCGG-GCc -5'
24597 3' -62.7 NC_005264.1 + 1537 0.71 0.372283
Target:  5'- cCCCGCGGCguUGacCGCGC-CGGCaauaggCGGg -3'
miRNA:   3'- -GGGCGCCG--ACaaGCGCGaGCCGg-----GCC- -5'
24597 3' -62.7 NC_005264.1 + 120564 0.71 0.372283
Target:  5'- cCCCGCGGCguUGacCGCGC-CGGCaauaggCGGg -3'
miRNA:   3'- -GGGCGCCG--ACaaGCGCGaGCCGg-----GCC- -5'
24597 3' -62.7 NC_005264.1 + 98434 0.71 0.379942
Target:  5'- gCCCGCGGCg--UCgGC-CUUGGCCgGGc -3'
miRNA:   3'- -GGGCGCCGacaAG-CGcGAGCCGGgCC- -5'
24597 3' -62.7 NC_005264.1 + 35486 0.71 0.395572
Target:  5'- gCCGCGGCcGaUCGCGa-CGGCuuGGu -3'
miRNA:   3'- gGGCGCCGaCaAGCGCgaGCCGggCC- -5'
24597 3' -62.7 NC_005264.1 + 75760 0.7 0.423077
Target:  5'- aCCCGCgaGGCUGUguggcugguucucguUCGCGCUC-GCCUccaGGu -3'
miRNA:   3'- -GGGCG--CCGACA---------------AGCGCGAGcCGGG---CC- -5'
24597 3' -62.7 NC_005264.1 + 16765 0.7 0.428049
Target:  5'- aCCCGC-GCggGggCGCGCuguUCGGgCCGGa -3'
miRNA:   3'- -GGGCGcCGa-CaaGCGCG---AGCCgGGCC- -5'
24597 3' -62.7 NC_005264.1 + 155531 0.7 0.462049
Target:  5'- uCCCGCGGCUcguucccagaGUUCGCcuuucccgucGCUaGGCCCc- -3'
miRNA:   3'- -GGGCGCCGA----------CAAGCG----------CGAgCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 139427 0.7 0.462049
Target:  5'- aCCGCuGGCguacgCGUGCUCGGCCg-- -3'
miRNA:   3'- gGGCG-CCGacaa-GCGCGAGCCGGgcc -5'
24597 3' -62.7 NC_005264.1 + 36504 0.7 0.462049
Target:  5'- uCCCGCGGCUcguucccagaGUUCGCcuuucccgucGCUaGGCCCc- -3'
miRNA:   3'- -GGGCGCCGA----------CAAGCG----------CGAgCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 94597 0.7 0.47077
Target:  5'- gCCCGCGGCg---CGgGCaUGGCuuGGc -3'
miRNA:   3'- -GGGCGCCGacaaGCgCGaGCCGggCC- -5'
24597 3' -62.7 NC_005264.1 + 116417 0.69 0.479574
Target:  5'- gCCCGCGGCaGgUCGCuggggGCgucUGGCCgCGGg -3'
miRNA:   3'- -GGGCGCCGaCaAGCG-----CGa--GCCGG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.