miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24597 3' -62.7 NC_005264.1 + 146418 0.66 0.676315
Target:  5'- cCCCGCGGCag-UCGag--CGGCCCu- -3'
miRNA:   3'- -GGGCGCCGacaAGCgcgaGCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 67375 0.66 0.6668
Target:  5'- gCCCGCGcucGCUGcgCcCGC-CGGCgCGGu -3'
miRNA:   3'- -GGGCGC---CGACaaGcGCGaGCCGgGCC- -5'
24597 3' -62.7 NC_005264.1 + 26273 0.66 0.6668
Target:  5'- uUCCGCGGCgcguuccugGaUCGCGaUCGGCUCc- -3'
miRNA:   3'- -GGGCGCCGa--------CaAGCGCgAGCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 42066 0.66 0.6668
Target:  5'- gCCCGCGGCgcgUgGCGUcagCuGCgCCGGg -3'
miRNA:   3'- -GGGCGCCGacaAgCGCGa--GcCG-GGCC- -5'
24597 3' -62.7 NC_005264.1 + 55142 0.66 0.6668
Target:  5'- gCCGUGcGCUGUgcuggCGCaGCguaugCGGCCUcuGGg -3'
miRNA:   3'- gGGCGC-CGACAa----GCG-CGa----GCCGGG--CC- -5'
24597 3' -62.7 NC_005264.1 + 87718 0.66 0.65726
Target:  5'- aCgCGCGGCcauuUGacugCGCcccaGCUCGGCgCCGGc -3'
miRNA:   3'- -GgGCGCCG----ACaa--GCG----CGAGCCG-GGCC- -5'
24597 3' -62.7 NC_005264.1 + 79417 0.66 0.65535
Target:  5'- gCCGCGGCggaacccaGCGUgggCGGUgCGGg -3'
miRNA:   3'- gGGCGCCGacaag---CGCGa--GCCGgGCC- -5'
24597 3' -62.7 NC_005264.1 + 139545 0.66 0.647703
Target:  5'- aCUCGUGGCgaUGUUUGCGCUCGcugcacgcgcGCgCGa -3'
miRNA:   3'- -GGGCGCCG--ACAAGCGCGAGC----------CGgGCc -5'
24597 3' -62.7 NC_005264.1 + 78508 0.66 0.647703
Target:  5'- -aCGCGGUgaggccaGUaaccaUCGCGC-CGuGCCCGGu -3'
miRNA:   3'- ggGCGCCGa------CA-----AGCGCGaGC-CGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 98740 0.66 0.647703
Target:  5'- aCUGaauCUGUUUGCGUUagUGGCCCGGa -3'
miRNA:   3'- gGGCgccGACAAGCGCGA--GCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 20140 0.67 0.641962
Target:  5'- gCCGCGGCUcaccgCGCGCaaaaaauaaaccaguUCGGCCg-- -3'
miRNA:   3'- gGGCGCCGAcaa--GCGCG---------------AGCCGGgcc -5'
24597 3' -62.7 NC_005264.1 + 9028 0.67 0.638134
Target:  5'- uCCCGaC-GC-GUUCGCGCcUGGCuuGGg -3'
miRNA:   3'- -GGGC-GcCGaCAAGCGCGaGCCGggCC- -5'
24597 3' -62.7 NC_005264.1 + 146231 0.67 0.628562
Target:  5'- gCCGCGGCg--UCGUGg-CG-CCCGGa -3'
miRNA:   3'- gGGCGCCGacaAGCGCgaGCcGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 162313 0.67 0.628562
Target:  5'- gCCGCGGguCUGaUCG-G-UCGGCCUGGg -3'
miRNA:   3'- gGGCGCC--GACaAGCgCgAGCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 15739 0.67 0.628562
Target:  5'- aCgGCGGCcuggcuugauuaUGUgugCGCGCgagcgUGGCuCCGGg -3'
miRNA:   3'- gGgCGCCG------------ACAa--GCGCGa----GCCG-GGCC- -5'
24597 3' -62.7 NC_005264.1 + 132425 0.67 0.628562
Target:  5'- gCCGCGGCUGUacaaCGCuacGCUCG--CCGGc -3'
miRNA:   3'- gGGCGCCGACAa---GCG---CGAGCcgGGCC- -5'
24597 3' -62.7 NC_005264.1 + 43286 0.67 0.628562
Target:  5'- gCCGCGGguCUGaUCG-G-UCGGCCUGGg -3'
miRNA:   3'- gGGCGCC--GACaAGCgCgAGCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 27632 0.67 0.628562
Target:  5'- --gGCGGCUGgUCGCGCgaacucguUUGGCCacgCGGc -3'
miRNA:   3'- gggCGCCGACaAGCGCG--------AGCCGG---GCC- -5'
24597 3' -62.7 NC_005264.1 + 117421 0.67 0.618992
Target:  5'- aUCGgGGCUGUcgcggCGCGCagGGCgCCGc -3'
miRNA:   3'- gGGCgCCGACAa----GCGCGagCCG-GGCc -5'
24597 3' -62.7 NC_005264.1 + 133969 0.67 0.599884
Target:  5'- uUCGCGGUggcGUUCGcCGCgCGGUCCa- -3'
miRNA:   3'- gGGCGCCGa--CAAGC-GCGaGCCGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.