miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24597 3' -62.7 NC_005264.1 + 32 0.72 0.35507
Target:  5'- gCCGCGGCccuagcUGUUCGaacgagcgcuuauuUGCUCGGUCaCGGa -3'
miRNA:   3'- gGGCGCCG------ACAAGC--------------GCGAGCCGG-GCC- -5'
24597 3' -62.7 NC_005264.1 + 1537 0.71 0.372283
Target:  5'- cCCCGCGGCguUGacCGCGC-CGGCaauaggCGGg -3'
miRNA:   3'- -GGGCGCCG--ACaaGCGCGaGCCGg-----GCC- -5'
24597 3' -62.7 NC_005264.1 + 3804 0.69 0.524723
Target:  5'- -gCGUGGCgGUcCGCGaguUCgGGCCCGGg -3'
miRNA:   3'- ggGCGCCGaCAaGCGCg--AG-CCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 7657 0.66 0.676315
Target:  5'- gCCUGcCGGCUcGga-GgGCUCGGCCUccauGGg -3'
miRNA:   3'- -GGGC-GCCGA-CaagCgCGAGCCGGG----CC- -5'
24597 3' -62.7 NC_005264.1 + 8851 0.66 0.685799
Target:  5'- gUCGCGaGCg--UCGCucuaaguacucGCUCGGCCCa- -3'
miRNA:   3'- gGGCGC-CGacaAGCG-----------CGAGCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 9028 0.67 0.638134
Target:  5'- uCCCGaC-GC-GUUCGCGCcUGGCuuGGg -3'
miRNA:   3'- -GGGC-GcCGaCAAGCGCGaGCCGggCC- -5'
24597 3' -62.7 NC_005264.1 + 15739 0.67 0.628562
Target:  5'- aCgGCGGCcuggcuugauuaUGUgugCGCGCgagcgUGGCuCCGGg -3'
miRNA:   3'- gGgCGCCG------------ACAa--GCGCGa----GCCG-GGCC- -5'
24597 3' -62.7 NC_005264.1 + 16765 0.7 0.428049
Target:  5'- aCCCGC-GCggGggCGCGCuguUCGGgCCGGa -3'
miRNA:   3'- -GGGCGcCGa-CaaGCGCG---AGCCgGGCC- -5'
24597 3' -62.7 NC_005264.1 + 17737 0.73 0.32373
Target:  5'- gCCGCGGCgcaaccuaugccaaGUUCGCggcaaggagagcuGCcCGGCCCGGc -3'
miRNA:   3'- gGGCGCCGa-------------CAAGCG-------------CGaGCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 20140 0.67 0.641962
Target:  5'- gCCGCGGCUcaccgCGCGCaaaaaauaaaccaguUCGGCCg-- -3'
miRNA:   3'- gGGCGCCGAcaa--GCGCG---------------AGCCGGgcc -5'
24597 3' -62.7 NC_005264.1 + 23045 0.66 0.695243
Target:  5'- gCCGaCGGCacgcGUUCGUGCUUG-CuuGGg -3'
miRNA:   3'- gGGC-GCCGa---CAAGCGCGAGCcGggCC- -5'
24597 3' -62.7 NC_005264.1 + 26273 0.66 0.6668
Target:  5'- uUCCGCGGCgcguuccugGaUCGCGaUCGGCUCc- -3'
miRNA:   3'- -GGGCGCCGa--------CaAGCGCgAGCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 27632 0.67 0.628562
Target:  5'- --gGCGGCUGgUCGCGCgaacucguUUGGCCacgCGGc -3'
miRNA:   3'- gggCGCCGACaAGCGCG--------AGCCGG---GCC- -5'
24597 3' -62.7 NC_005264.1 + 27893 0.66 0.685799
Target:  5'- gCCCGCguuGGCU-UUCGUGCagaUCGGCCg-- -3'
miRNA:   3'- -GGGCG---CCGAcAAGCGCG---AGCCGGgcc -5'
24597 3' -62.7 NC_005264.1 + 30397 0.69 0.488458
Target:  5'- gCgGCGGCgGUcgCGCGC-CGGUgCGGa -3'
miRNA:   3'- gGgCGCCGaCAa-GCGCGaGCCGgGCC- -5'
24597 3' -62.7 NC_005264.1 + 30432 0.72 0.364729
Target:  5'- gCCGCGGCuUGUagcUCGUGCcugCGGCCaCGu -3'
miRNA:   3'- gGGCGCCG-ACA---AGCGCGa--GCCGG-GCc -5'
24597 3' -62.7 NC_005264.1 + 30853 0.66 0.695243
Target:  5'- gUCgGCGGCgg--CGCGC-CG-CCCGGu -3'
miRNA:   3'- -GGgCGCCGacaaGCGCGaGCcGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 34632 0.66 0.685799
Target:  5'- gCCCGCgGGgUGUUCGCGgCcacCGGUCgCGa -3'
miRNA:   3'- -GGGCG-CCgACAAGCGC-Ga--GCCGG-GCc -5'
24597 3' -62.7 NC_005264.1 + 35486 0.71 0.395572
Target:  5'- gCCGCGGCcGaUCGCGa-CGGCuuGGu -3'
miRNA:   3'- gGGCGCCGaCaAGCGCgaGCCGggCC- -5'
24597 3' -62.7 NC_005264.1 + 36504 0.7 0.462049
Target:  5'- uCCCGCGGCUcguucccagaGUUCGCcuuucccgucGCUaGGCCCc- -3'
miRNA:   3'- -GGGCGCCGA----------CAAGCG----------CGAgCCGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.