miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24597 3' -62.7 NC_005264.1 + 49328 1.11 0.000733
Target:  5'- uCCCGCGGCUGUUCGCGCUCGGCCCGGa -3'
miRNA:   3'- -GGGCGCCGACAAGCGCGAGCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 137216 0.68 0.579912
Target:  5'- -gCGCGGCcccaccgccgccgUGUUCcgcaaCGC-CGGCCCGGc -3'
miRNA:   3'- ggGCGCCG-------------ACAAGc----GCGaGCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 146231 0.67 0.628562
Target:  5'- gCCGCGGCg--UCGUGg-CG-CCCGGa -3'
miRNA:   3'- gGGCGCCGacaAGCGCgaGCcGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 150955 0.66 0.695243
Target:  5'- uCCCaCGGCcc-UCGCgGCUCGGCUCu- -3'
miRNA:   3'- -GGGcGCCGacaAGCG-CGAGCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 32 0.72 0.35507
Target:  5'- gCCGCGGCccuagcUGUUCGaacgagcgcuuauuUGCUCGGUCaCGGa -3'
miRNA:   3'- gGGCGCCG------ACAAGC--------------GCGAGCCGG-GCC- -5'
24597 3' -62.7 NC_005264.1 + 30432 0.72 0.364729
Target:  5'- gCCGCGGCuUGUagcUCGUGCcugCGGCCaCGu -3'
miRNA:   3'- gGGCGCCG-ACA---AGCGCGa--GCCGG-GCc -5'
24597 3' -62.7 NC_005264.1 + 35486 0.71 0.395572
Target:  5'- gCCGCGGCcGaUCGCGa-CGGCuuGGu -3'
miRNA:   3'- gGGCGCCGaCaAGCGCgaGCCGggCC- -5'
24597 3' -62.7 NC_005264.1 + 75760 0.7 0.423077
Target:  5'- aCCCGCgaGGCUGUguggcugguucucguUCGCGCUC-GCCUccaGGu -3'
miRNA:   3'- -GGGCG--CCGACA---------------AGCGCGAGcCGGG---CC- -5'
24597 3' -62.7 NC_005264.1 + 116417 0.69 0.479574
Target:  5'- gCCCGCGGCaGgUCGCuggggGCgucUGGCCgCGGg -3'
miRNA:   3'- -GGGCGCCGaCaAGCG-----CGa--GCCGG-GCC- -5'
24597 3' -62.7 NC_005264.1 + 113034 0.68 0.571393
Target:  5'- uUCCGCGGC----CGCGaCUgGGCCgCGGc -3'
miRNA:   3'- -GGGCGCCGacaaGCGC-GAgCCGG-GCC- -5'
24597 3' -62.7 NC_005264.1 + 122830 0.69 0.524723
Target:  5'- -gCGUGGCgGUcCGCGaguUCgGGCCCGGg -3'
miRNA:   3'- ggGCGCCGaCAaGCGCg--AG-CCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 155531 0.7 0.462049
Target:  5'- uCCCGCGGCUcguucccagaGUUCGCcuuucccgucGCUaGGCCCc- -3'
miRNA:   3'- -GGGCGCCGA----------CAAGCG----------CGAgCCGGGcc -5'
24597 3' -62.7 NC_005264.1 + 82337 0.74 0.258587
Target:  5'- aCCGCGGCgaUGUucUCGCuCUCGGCCUuGGc -3'
miRNA:   3'- gGGCGCCG--ACA--AGCGcGAGCCGGG-CC- -5'
24597 3' -62.7 NC_005264.1 + 156102 0.68 0.561964
Target:  5'- aCCUGUGGCUGa--GCGaagagUGGCCCGc -3'
miRNA:   3'- -GGGCGCCGACaagCGCga---GCCGGGCc -5'
24597 3' -62.7 NC_005264.1 + 160335 0.73 0.288779
Target:  5'- cCCCGC-GCUGaagUCGCGCgaGGCCCGc -3'
miRNA:   3'- -GGGCGcCGACa--AGCGCGagCCGGGCc -5'
24597 3' -62.7 NC_005264.1 + 16765 0.7 0.428049
Target:  5'- aCCCGC-GCggGggCGCGCuguUCGGgCCGGa -3'
miRNA:   3'- -GGGCGcCGa-CaaGCGCG---AGCCgGGCC- -5'
24597 3' -62.7 NC_005264.1 + 157204 0.68 0.56856
Target:  5'- gCCGC-GCUGUggggacaccuagcgUCGCGCggcccgauagCGGCuCCGGu -3'
miRNA:   3'- gGGCGcCGACA--------------AGCGCGa---------GCCG-GGCC- -5'
24597 3' -62.7 NC_005264.1 + 117421 0.67 0.618992
Target:  5'- aUCGgGGCUGUcgcggCGCGCagGGCgCCGc -3'
miRNA:   3'- gGGCgCCGACAa----GCGCGagCCG-GGCc -5'
24597 3' -62.7 NC_005264.1 + 17737 0.73 0.32373
Target:  5'- gCCGCGGCgcaaccuaugccaaGUUCGCggcaaggagagcuGCcCGGCCCGGc -3'
miRNA:   3'- gGGCGCCGa-------------CAAGCG-------------CGaGCCGGGCC- -5'
24597 3' -62.7 NC_005264.1 + 120564 0.71 0.372283
Target:  5'- cCCCGCGGCguUGacCGCGC-CGGCaauaggCGGg -3'
miRNA:   3'- -GGGCGCCG--ACaaGCGCGaGCCGg-----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.