miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24597 5' -53.6 NC_005264.1 + 159677 0.66 0.970896
Target:  5'- aGGCAAGGacgcguUCGGUG-GUcUUGcCCUGCc -3'
miRNA:   3'- -CCGUUCU------AGCCGCgCAuAAC-GGACGu -5'
24597 5' -53.6 NC_005264.1 + 142029 0.66 0.970896
Target:  5'- cGCGcGAUUGGCGUGcAUgGCgUGCAc -3'
miRNA:   3'- cCGUuCUAGCCGCGCaUAaCGgACGU- -5'
24597 5' -53.6 NC_005264.1 + 49495 0.66 0.970896
Target:  5'- gGGCAgcAGGU--GCGCGUcuucacgUGCCUGCu -3'
miRNA:   3'- -CCGU--UCUAgcCGCGCAua-----ACGGACGu -5'
24597 5' -53.6 NC_005264.1 + 58367 0.66 0.970896
Target:  5'- uGGCGGGGcCGGCGCGaUAUgcGCCg--- -3'
miRNA:   3'- -CCGUUCUaGCCGCGC-AUAa-CGGacgu -5'
24597 5' -53.6 NC_005264.1 + 145503 0.66 0.970896
Target:  5'- cGUGAGAUagCGGCGa-UGaUGCCUGCGa -3'
miRNA:   3'- cCGUUCUA--GCCGCgcAUaACGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 153086 0.66 0.970896
Target:  5'- aGGUggGAgcaCGGCGgc--UUGCCUGCc -3'
miRNA:   3'- -CCGuuCUa--GCCGCgcauAACGGACGu -5'
24597 5' -53.6 NC_005264.1 + 98696 0.66 0.970896
Target:  5'- cGGCcGGAUcgCGGCGCcGUGgcgaGCCUGa- -3'
miRNA:   3'- -CCGuUCUA--GCCGCG-CAUaa--CGGACgu -5'
24597 5' -53.6 NC_005264.1 + 45166 0.66 0.970896
Target:  5'- aGGCAGGAgagcgCGGCaGCGaacgGUCUGgCAg -3'
miRNA:   3'- -CCGUUCUa----GCCG-CGCauaaCGGAC-GU- -5'
24597 5' -53.6 NC_005264.1 + 93876 0.66 0.967874
Target:  5'- uGGCGAGccaGGCgGCGgaccuUAUUGCCUGg- -3'
miRNA:   3'- -CCGUUCuagCCG-CGC-----AUAACGGACgu -5'
24597 5' -53.6 NC_005264.1 + 89525 0.66 0.964637
Target:  5'- cGGCAGgcggccuauuGAUUGGCGCGggcagUGUCcgGCGa -3'
miRNA:   3'- -CCGUU----------CUAGCCGCGCaua--ACGGa-CGU- -5'
24597 5' -53.6 NC_005264.1 + 74911 0.66 0.961178
Target:  5'- aGCcauGGUCGGCGCGUAcu-CgUGCAa -3'
miRNA:   3'- cCGuu-CUAGCCGCGCAUaacGgACGU- -5'
24597 5' -53.6 NC_005264.1 + 45035 0.66 0.953571
Target:  5'- cGGCAGGAUggaCGGCGaCGaggaUGCCgcGCAg -3'
miRNA:   3'- -CCGUUCUA---GCCGC-GCaua-ACGGa-CGU- -5'
24597 5' -53.6 NC_005264.1 + 142502 0.66 0.953571
Target:  5'- uGGCA----CGGCGCGUuuccUGCUUGCc -3'
miRNA:   3'- -CCGUucuaGCCGCGCAua--ACGGACGu -5'
24597 5' -53.6 NC_005264.1 + 50807 0.67 0.949416
Target:  5'- uGUcGGAUCGGCGCGcgcgcagguUUGCgUGUAg -3'
miRNA:   3'- cCGuUCUAGCCGCGCau-------AACGgACGU- -5'
24597 5' -53.6 NC_005264.1 + 162670 0.67 0.948987
Target:  5'- cGGCGGGucguagguguacgGUCGGCGCGcugcgcGCCgGCGu -3'
miRNA:   3'- -CCGUUC-------------UAGCCGCGCauaa--CGGaCGU- -5'
24597 5' -53.6 NC_005264.1 + 20227 0.67 0.94547
Target:  5'- aGGCGAGGUagccCGGCGUGgccaucgucgcgGCCgGCAu -3'
miRNA:   3'- -CCGUUCUA----GCCGCGCauaa--------CGGaCGU- -5'
24597 5' -53.6 NC_005264.1 + 59796 0.67 0.945019
Target:  5'- cGCAGGG--GGCGCGUAgcgcaccaUGCUUGCc -3'
miRNA:   3'- cCGUUCUagCCGCGCAUa-------ACGGACGu -5'
24597 5' -53.6 NC_005264.1 + 136781 0.67 0.945019
Target:  5'- aGUGAGuccuuUCGGCGCGUG--GCCggGCGg -3'
miRNA:   3'- cCGUUCu----AGCCGCGCAUaaCGGa-CGU- -5'
24597 5' -53.6 NC_005264.1 + 29563 0.67 0.945019
Target:  5'- aGGCAgAGAucacguugccgcUCGGCcUGU-UUGCCUGCGg -3'
miRNA:   3'- -CCGU-UCU------------AGCCGcGCAuAACGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 8378 0.67 0.94038
Target:  5'- cGGCGccGGAcgCGGCGCGUugaagcUGCCggaGCu -3'
miRNA:   3'- -CCGU--UCUa-GCCGCGCAua----ACGGa--CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.