Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 49362 | 1.12 | 0.003233 |
Target: 5'- cGGCAAGAUCGGCGCGUAUUGCCUGCAg -3' miRNA: 3'- -CCGUUCUAGCCGCGCAUAACGGACGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 150634 | 0.75 | 0.555555 |
Target: 5'- uGGCGAGG-CGGCGCGcAUcGCCcUGCGa -3' miRNA: 3'- -CCGUUCUaGCCGCGCaUAaCGG-ACGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 31607 | 0.75 | 0.555555 |
Target: 5'- uGGCGAGG-CGGCGCGcAUcGCCcUGCGa -3' miRNA: 3'- -CCGUUCUaGCCGCGCaUAaCGG-ACGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 63630 | 0.75 | 0.596754 |
Target: 5'- cGCGAGAgaagCGGcCGCGgag-GCCUGCGa -3' miRNA: 3'- cCGUUCUa---GCC-GCGCauaaCGGACGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 125901 | 0.74 | 0.648793 |
Target: 5'- gGGCuuGuuucUCGGCGCGUGUUGCUguUGCc -3' miRNA: 3'- -CCGuuCu---AGCCGCGCAUAACGG--ACGu -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 6875 | 0.74 | 0.648793 |
Target: 5'- gGGCuuGuuucUCGGCGCGUGUUGCUguUGCc -3' miRNA: 3'- -CCGuuCu---AGCCGCGCAUAACGG--ACGu -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 21993 | 0.71 | 0.779567 |
Target: 5'- uGGCGcaagcgaaaGGcgCGGCGCGUAgguuuuUUGCCcGCGa -3' miRNA: 3'- -CCGU---------UCuaGCCGCGCAU------AACGGaCGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 20251 | 0.71 | 0.798163 |
Target: 5'- gGGCAGGGguugCGGCGCG----GCCUcGCGg -3' miRNA: 3'- -CCGUUCUa---GCCGCGCauaaCGGA-CGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 83192 | 0.7 | 0.815253 |
Target: 5'- cGGCAGGcgCGGCGCGaacuaugcgcuuuUAUggGCCguUGCGc -3' miRNA: 3'- -CCGUUCuaGCCGCGC-------------AUAa-CGG--ACGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 2393 | 0.7 | 0.833418 |
Target: 5'- cGCAGGAgccCGGCGCcg---GCCUGCc -3' miRNA: 3'- cCGUUCUa--GCCGCGcauaaCGGACGu -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 121420 | 0.7 | 0.833418 |
Target: 5'- cGCAGGAgccCGGCGCcg---GCCUGCc -3' miRNA: 3'- cCGUUCUa--GCCGCGcauaaCGGACGu -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 131684 | 0.7 | 0.841778 |
Target: 5'- cGGCAc-GUCGGCucgcaaGCGUAgcguggGCCUGCGc -3' miRNA: 3'- -CCGUucUAGCCG------CGCAUaa----CGGACGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 107891 | 0.7 | 0.84994 |
Target: 5'- uGGCAgcuagcGGcgCGGUGCGUA-UGCgCUGUAu -3' miRNA: 3'- -CCGU------UCuaGCCGCGCAUaACG-GACGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 46457 | 0.7 | 0.84994 |
Target: 5'- cGGCuuuuGcgCGGCGCucuUUGCCUGUg -3' miRNA: 3'- -CCGuu--CuaGCCGCGcauAACGGACGu -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 74786 | 0.69 | 0.857898 |
Target: 5'- uGUAAGAU-GGCGCccGUAUUGaCCUGUAc -3' miRNA: 3'- cCGUUCUAgCCGCG--CAUAAC-GGACGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 105651 | 0.69 | 0.865644 |
Target: 5'- uGGCAcGggCGGCGCu--UUGCCggcgGCAg -3' miRNA: 3'- -CCGUuCuaGCCGCGcauAACGGa---CGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 75238 | 0.69 | 0.887554 |
Target: 5'- cGGCcAGGUCGucCGCGU-UUGCCgGCAa -3' miRNA: 3'- -CCGuUCUAGCc-GCGCAuAACGGaCGU- -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 110212 | 0.69 | 0.887554 |
Target: 5'- cGGCAGGggCGGCacggGCGgagaaUGUCUGCu -3' miRNA: 3'- -CCGUUCuaGCCG----CGCaua--ACGGACGu -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 150704 | 0.69 | 0.894396 |
Target: 5'- aGGCAGGGcucUCGGCGgGgc-UGCCcGCc -3' miRNA: 3'- -CCGUUCU---AGCCGCgCauaACGGaCGu -5' |
|||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 31678 | 0.69 | 0.894396 |
Target: 5'- aGGCAGGGcucUCGGCGgGgc-UGCCcGCc -3' miRNA: 3'- -CCGUUCU---AGCCGCgCauaACGGaCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home