miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24597 5' -53.6 NC_005264.1 + 8378 0.67 0.94038
Target:  5'- cGGCGccGGAcgCGGCGCGUugaagcUGCCggaGCu -3'
miRNA:   3'- -CCGU--UCUa-GCCGCGCAua----ACGGa--CGu -5'
24597 5' -53.6 NC_005264.1 + 50297 0.67 0.94038
Target:  5'- cGGCuaacAGGUCGGCG-GUuacgGCCUGgAg -3'
miRNA:   3'- -CCGu---UCUAGCCGCgCAuaa-CGGACgU- -5'
24597 5' -53.6 NC_005264.1 + 142696 0.67 0.935496
Target:  5'- gGGCGccggCGGCGCGccacGCCUGCc -3'
miRNA:   3'- -CCGUucuaGCCGCGCauaaCGGACGu -5'
24597 5' -53.6 NC_005264.1 + 47394 0.67 0.935496
Target:  5'- aGCGAGAgUGGCGCGUgGUUGggUGCGc -3'
miRNA:   3'- cCGUUCUaGCCGCGCA-UAACggACGU- -5'
24597 5' -53.6 NC_005264.1 + 122429 0.67 0.929838
Target:  5'- cGCGGGGUCGGUGCGcgggggagggacgUAggGCC-GCGc -3'
miRNA:   3'- cCGUUCUAGCCGCGC-------------AUaaCGGaCGU- -5'
24597 5' -53.6 NC_005264.1 + 3402 0.67 0.929838
Target:  5'- cGCGGGGUCGGUGCGcgggggagggacgUAggGCC-GCGc -3'
miRNA:   3'- cCGUUCUAGCCGCGC-------------AUaaCGGaCGU- -5'
24597 5' -53.6 NC_005264.1 + 66993 0.68 0.924985
Target:  5'- gGGCGAGcaaCGGCGaGUGcUGCCUGg- -3'
miRNA:   3'- -CCGUUCua-GCCGCgCAUaACGGACgu -5'
24597 5' -53.6 NC_005264.1 + 43159 0.68 0.915863
Target:  5'- cGGgGAGGggggGGCGCGUGagccucuaucgcgcUGCCUGCGa -3'
miRNA:   3'- -CCgUUCUag--CCGCGCAUa-------------ACGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 162186 0.68 0.915863
Target:  5'- cGGgGAGGggggGGCGCGUGagccucuaucgcgcUGCCUGCGa -3'
miRNA:   3'- -CCgUUCUag--CCGCGCAUa-------------ACGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 83108 0.68 0.913484
Target:  5'- uGGCAAGAaacugCGGCaccuCGUAUagcuccGCCUGCGu -3'
miRNA:   3'- -CCGUUCUa----GCCGc---GCAUAa-----CGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 108671 0.68 0.913484
Target:  5'- aGGCGAGGUUGGCG-GUGUgcGCCa--- -3'
miRNA:   3'- -CCGUUCUAGCCGCgCAUAa-CGGacgu -5'
24597 5' -53.6 NC_005264.1 + 43643 0.68 0.905481
Target:  5'- cGGCGAGGucguagguguacggUCGGCGCGcugcgcGCCgGCGu -3'
miRNA:   3'- -CCGUUCU--------------AGCCGCGCauaa--CGGaCGU- -5'
24597 5' -53.6 NC_005264.1 + 146628 0.68 0.901001
Target:  5'- aGGguAGcgCGGCGCGUcccccGUUGUCcgGUAg -3'
miRNA:   3'- -CCguUCuaGCCGCGCA-----UAACGGa-CGU- -5'
24597 5' -53.6 NC_005264.1 + 91499 0.68 0.901001
Target:  5'- uGCGGGGuuUCGGCgGCGUAgaaUGCCgcGCAc -3'
miRNA:   3'- cCGUUCU--AGCCG-CGCAUa--ACGGa-CGU- -5'
24597 5' -53.6 NC_005264.1 + 80475 0.69 0.894396
Target:  5'- cGGCAccGGAUCGaCGCGcc-UGCCUGgCAc -3'
miRNA:   3'- -CCGU--UCUAGCcGCGCauaACGGAC-GU- -5'
24597 5' -53.6 NC_005264.1 + 150704 0.69 0.894396
Target:  5'- aGGCAGGGcucUCGGCGgGgc-UGCCcGCc -3'
miRNA:   3'- -CCGUUCU---AGCCGCgCauaACGGaCGu -5'
24597 5' -53.6 NC_005264.1 + 31678 0.69 0.894396
Target:  5'- aGGCAGGGcucUCGGCGgGgc-UGCCcGCc -3'
miRNA:   3'- -CCGUUCU---AGCCGCgCauaACGGaCGu -5'
24597 5' -53.6 NC_005264.1 + 75238 0.69 0.887554
Target:  5'- cGGCcAGGUCGucCGCGU-UUGCCgGCAa -3'
miRNA:   3'- -CCGuUCUAGCc-GCGCAuAACGGaCGU- -5'
24597 5' -53.6 NC_005264.1 + 110212 0.69 0.887554
Target:  5'- cGGCAGGggCGGCacggGCGgagaaUGUCUGCu -3'
miRNA:   3'- -CCGUUCuaGCCG----CGCaua--ACGGACGu -5'
24597 5' -53.6 NC_005264.1 + 105651 0.69 0.865644
Target:  5'- uGGCAcGggCGGCGCu--UUGCCggcgGCAg -3'
miRNA:   3'- -CCGUuCuaGCCGCGcauAACGGa---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.