Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24597 | 5' | -53.6 | NC_005264.1 | + | 2393 | 0.7 | 0.833418 |
Target: 5'- cGCAGGAgccCGGCGCcg---GCCUGCc -3' miRNA: 3'- cCGUUCUa--GCCGCGcauaaCGGACGu -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 3402 | 0.67 | 0.929838 |
Target: 5'- cGCGGGGUCGGUGCGcgggggagggacgUAggGCC-GCGc -3' miRNA: 3'- cCGUUCUAGCCGCGC-------------AUaaCGGaCGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 6875 | 0.74 | 0.648793 |
Target: 5'- gGGCuuGuuucUCGGCGCGUGUUGCUguUGCc -3' miRNA: 3'- -CCGuuCu---AGCCGCGCAUAACGG--ACGu -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 8378 | 0.67 | 0.94038 |
Target: 5'- cGGCGccGGAcgCGGCGCGUugaagcUGCCggaGCu -3' miRNA: 3'- -CCGU--UCUa-GCCGCGCAua----ACGGa--CGu -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 20227 | 0.67 | 0.94547 |
Target: 5'- aGGCGAGGUagccCGGCGUGgccaucgucgcgGCCgGCAu -3' miRNA: 3'- -CCGUUCUA----GCCGCGCauaa--------CGGaCGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 20251 | 0.71 | 0.798163 |
Target: 5'- gGGCAGGGguugCGGCGCG----GCCUcGCGg -3' miRNA: 3'- -CCGUUCUa---GCCGCGCauaaCGGA-CGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 21993 | 0.71 | 0.779567 |
Target: 5'- uGGCGcaagcgaaaGGcgCGGCGCGUAgguuuuUUGCCcGCGa -3' miRNA: 3'- -CCGU---------UCuaGCCGCGCAU------AACGGaCGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 29563 | 0.67 | 0.945019 |
Target: 5'- aGGCAgAGAucacguugccgcUCGGCcUGU-UUGCCUGCGg -3' miRNA: 3'- -CCGU-UCU------------AGCCGcGCAuAACGGACGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 31607 | 0.75 | 0.555555 |
Target: 5'- uGGCGAGG-CGGCGCGcAUcGCCcUGCGa -3' miRNA: 3'- -CCGUUCUaGCCGCGCaUAaCGG-ACGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 31678 | 0.69 | 0.894396 |
Target: 5'- aGGCAGGGcucUCGGCGgGgc-UGCCcGCc -3' miRNA: 3'- -CCGUUCU---AGCCGCgCauaACGGaCGu -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 43159 | 0.68 | 0.915863 |
Target: 5'- cGGgGAGGggggGGCGCGUGagccucuaucgcgcUGCCUGCGa -3' miRNA: 3'- -CCgUUCUag--CCGCGCAUa-------------ACGGACGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 43643 | 0.68 | 0.905481 |
Target: 5'- cGGCGAGGucguagguguacggUCGGCGCGcugcgcGCCgGCGu -3' miRNA: 3'- -CCGUUCU--------------AGCCGCGCauaa--CGGaCGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 45035 | 0.66 | 0.953571 |
Target: 5'- cGGCAGGAUggaCGGCGaCGaggaUGCCgcGCAg -3' miRNA: 3'- -CCGUUCUA---GCCGC-GCaua-ACGGa-CGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 45166 | 0.66 | 0.970896 |
Target: 5'- aGGCAGGAgagcgCGGCaGCGaacgGUCUGgCAg -3' miRNA: 3'- -CCGUUCUa----GCCG-CGCauaaCGGAC-GU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 46457 | 0.7 | 0.84994 |
Target: 5'- cGGCuuuuGcgCGGCGCucuUUGCCUGUg -3' miRNA: 3'- -CCGuu--CuaGCCGCGcauAACGGACGu -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 47394 | 0.67 | 0.935496 |
Target: 5'- aGCGAGAgUGGCGCGUgGUUGggUGCGc -3' miRNA: 3'- cCGUUCUaGCCGCGCA-UAACggACGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 49362 | 1.12 | 0.003233 |
Target: 5'- cGGCAAGAUCGGCGCGUAUUGCCUGCAg -3' miRNA: 3'- -CCGUUCUAGCCGCGCAUAACGGACGU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 49495 | 0.66 | 0.970896 |
Target: 5'- gGGCAgcAGGU--GCGCGUcuucacgUGCCUGCu -3' miRNA: 3'- -CCGU--UCUAgcCGCGCAua-----ACGGACGu -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 50297 | 0.67 | 0.94038 |
Target: 5'- cGGCuaacAGGUCGGCG-GUuacgGCCUGgAg -3' miRNA: 3'- -CCGu---UCUAGCCGCgCAuaa-CGGACgU- -5' |
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24597 | 5' | -53.6 | NC_005264.1 | + | 50807 | 0.67 | 0.949416 |
Target: 5'- uGUcGGAUCGGCGCGcgcgcagguUUGCgUGUAg -3' miRNA: 3'- cCGuUCUAGCCGCGCau-------AACGgACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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