miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24597 5' -53.6 NC_005264.1 + 49362 1.12 0.003233
Target:  5'- cGGCAAGAUCGGCGCGUAUUGCCUGCAg -3'
miRNA:   3'- -CCGUUCUAGCCGCGCAUAACGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 136781 0.67 0.945019
Target:  5'- aGUGAGuccuuUCGGCGCGUG--GCCggGCGg -3'
miRNA:   3'- cCGUUCu----AGCCGCGCAUaaCGGa-CGU- -5'
24597 5' -53.6 NC_005264.1 + 162670 0.67 0.948987
Target:  5'- cGGCGGGucguagguguacgGUCGGCGCGcugcgcGCCgGCGu -3'
miRNA:   3'- -CCGUUC-------------UAGCCGCGCauaa--CGGaCGU- -5'
24597 5' -53.6 NC_005264.1 + 145503 0.66 0.970896
Target:  5'- cGUGAGAUagCGGCGa-UGaUGCCUGCGa -3'
miRNA:   3'- cCGUUCUA--GCCGCgcAUaACGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 21993 0.71 0.779567
Target:  5'- uGGCGcaagcgaaaGGcgCGGCGCGUAgguuuuUUGCCcGCGa -3'
miRNA:   3'- -CCGU---------UCuaGCCGCGCAU------AACGGaCGU- -5'
24597 5' -53.6 NC_005264.1 + 20251 0.71 0.798163
Target:  5'- gGGCAGGGguugCGGCGCG----GCCUcGCGg -3'
miRNA:   3'- -CCGUUCUa---GCCGCGCauaaCGGA-CGU- -5'
24597 5' -53.6 NC_005264.1 + 46457 0.7 0.84994
Target:  5'- cGGCuuuuGcgCGGCGCucuUUGCCUGUg -3'
miRNA:   3'- -CCGuu--CuaGCCGCGcauAACGGACGu -5'
24597 5' -53.6 NC_005264.1 + 150704 0.69 0.894396
Target:  5'- aGGCAGGGcucUCGGCGgGgc-UGCCcGCc -3'
miRNA:   3'- -CCGUUCU---AGCCGCgCauaACGGaCGu -5'
24597 5' -53.6 NC_005264.1 + 162186 0.68 0.915863
Target:  5'- cGGgGAGGggggGGCGCGUGagccucuaucgcgcUGCCUGCGa -3'
miRNA:   3'- -CCgUUCUag--CCGCGCAUa-------------ACGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 127405 0.67 0.94038
Target:  5'- cGGCGccGGAcgCGGCGCGUugaagcUGCCggaGCu -3'
miRNA:   3'- -CCGU--UCUa-GCCGCGCAua----ACGGa--CGu -5'
24597 5' -53.6 NC_005264.1 + 122429 0.67 0.929838
Target:  5'- cGCGGGGUCGGUGCGcgggggagggacgUAggGCC-GCGc -3'
miRNA:   3'- cCGUUCUAGCCGCGC-------------AUaaCGGaCGU- -5'
24597 5' -53.6 NC_005264.1 + 83108 0.68 0.913484
Target:  5'- uGGCAAGAaacugCGGCaccuCGUAUagcuccGCCUGCGu -3'
miRNA:   3'- -CCGUUCUa----GCCGc---GCAUAa-----CGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 150634 0.75 0.555555
Target:  5'- uGGCGAGG-CGGCGCGcAUcGCCcUGCGa -3'
miRNA:   3'- -CCGUUCUaGCCGCGCaUAaCGG-ACGU- -5'
24597 5' -53.6 NC_005264.1 + 47394 0.67 0.935496
Target:  5'- aGCGAGAgUGGCGCGUgGUUGggUGCGc -3'
miRNA:   3'- cCGUUCUaGCCGCGCA-UAACggACGU- -5'
24597 5' -53.6 NC_005264.1 + 63630 0.75 0.596754
Target:  5'- cGCGAGAgaagCGGcCGCGgag-GCCUGCGa -3'
miRNA:   3'- cCGUUCUa---GCC-GCGCauaaCGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 80475 0.69 0.894396
Target:  5'- cGGCAccGGAUCGaCGCGcc-UGCCUGgCAc -3'
miRNA:   3'- -CCGU--UCUAGCcGCGCauaACGGAC-GU- -5'
24597 5' -53.6 NC_005264.1 + 142696 0.67 0.935496
Target:  5'- gGGCGccggCGGCGCGccacGCCUGCc -3'
miRNA:   3'- -CCGUucuaGCCGCGCauaaCGGACGu -5'
24597 5' -53.6 NC_005264.1 + 29563 0.67 0.945019
Target:  5'- aGGCAgAGAucacguugccgcUCGGCcUGU-UUGCCUGCGg -3'
miRNA:   3'- -CCGU-UCU------------AGCCGcGCAuAACGGACGU- -5'
24597 5' -53.6 NC_005264.1 + 125901 0.74 0.648793
Target:  5'- gGGCuuGuuucUCGGCGCGUGUUGCUguUGCc -3'
miRNA:   3'- -CCGuuCu---AGCCGCGCAUAACGG--ACGu -5'
24597 5' -53.6 NC_005264.1 + 121420 0.7 0.833418
Target:  5'- cGCAGGAgccCGGCGCcg---GCCUGCc -3'
miRNA:   3'- cCGUUCUa--GCCGCGcauaaCGGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.