miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 3' -59.9 NC_005264.1 + 136343 0.67 0.699515
Target:  5'- gGGAGagauauuauacgGGCGCUGggCGCUGCCGGCg -3'
miRNA:   3'- aCCUCaa----------CCGCGACggGUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 30843 0.67 0.693606
Target:  5'- -----cUGGCGCcggucgGCCCaccGCCACCGGCc -3'
miRNA:   3'- accucaACCGCGa-----CGGG---UGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 95449 0.67 0.693606
Target:  5'- cGGAGaugcGGCGCaucGUagacgaCGCCGCCGACu -3'
miRNA:   3'- aCCUCaa--CCGCGa--CGg-----GUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 60715 0.67 0.683718
Target:  5'- aGGuuGUUGGcCGCgGCCUcguACCGCCGcCa -3'
miRNA:   3'- aCCu-CAACC-GCGaCGGG---UGGUGGCuG- -5'
24600 3' -59.9 NC_005264.1 + 148798 0.67 0.683718
Target:  5'- aGGuGUauccuuGCGCuUGCCCuACCAUCGGCa -3'
miRNA:   3'- aCCuCAac----CGCG-ACGGG-UGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 130432 0.67 0.683718
Target:  5'- gGGAG-UGGCGUuccagcacaaagUcgcggcggacGCCgGCCGCCGGCa -3'
miRNA:   3'- aCCUCaACCGCG------------A----------CGGgUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 11405 0.67 0.683718
Target:  5'- gGGAG-UGGCGUuccagcacaaagUcgcggcggacGCCgGCCGCCGGCa -3'
miRNA:   3'- aCCUCaACCGCG------------A----------CGGgUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 131641 0.67 0.67379
Target:  5'- aUGGucacgccucGGUcuGCGgUGCCCGCCGCCaGACc -3'
miRNA:   3'- -ACC---------UCAacCGCgACGGGUGGUGG-CUG- -5'
24600 3' -59.9 NC_005264.1 + 140597 0.67 0.67379
Target:  5'- cUGGuuagaGGCGaCcGCCCagACCGCCGACg -3'
miRNA:   3'- -ACCucaa-CCGC-GaCGGG--UGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 3500 0.67 0.67379
Target:  5'- gUGGAGguuugcgGGCGUccUGUuuagUCACCACUGACc -3'
miRNA:   3'- -ACCUCaa-----CCGCG--ACG----GGUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 48342 0.67 0.653843
Target:  5'- gGGAGUUGGCGCa---CGCCAUggCGGCc -3'
miRNA:   3'- aCCUCAACCGCGacggGUGGUG--GCUG- -5'
24600 3' -59.9 NC_005264.1 + 146263 0.67 0.653843
Target:  5'- cGGAGUcaUGuGCGCcG-CCGCC-CCGGCg -3'
miRNA:   3'- aCCUCA--AC-CGCGaCgGGUGGuGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 20136 0.68 0.643841
Target:  5'- aUGcGGGcaGGCGaugGCgCGCCGCCGGCg -3'
miRNA:   3'- -AC-CUCaaCCGCga-CGgGUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 16910 0.68 0.641839
Target:  5'- gGuGAGgcccaugcccGCGCUGaCCCGCCGCCGGa -3'
miRNA:   3'- aC-CUCaac-------CGCGAC-GGGUGGUGGCUg -5'
24600 3' -59.9 NC_005264.1 + 68410 0.68 0.632829
Target:  5'- gGGAGgacGG-GCUGCUCGCUcuggacuACCGGCg -3'
miRNA:   3'- aCCUCaa-CCgCGACGGGUGG-------UGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 4720 0.68 0.623818
Target:  5'- cUGGuccAGacGcCGCUGCCCGCCgaGCCGGCg -3'
miRNA:   3'- -ACC---UCaaCcGCGACGGGUGG--UGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 51837 0.68 0.623818
Target:  5'- aGGGGUgGGCGCU-CCgCGggcgUCACCGACu -3'
miRNA:   3'- aCCUCAaCCGCGAcGG-GU----GGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 91119 0.68 0.603818
Target:  5'- cGGAGUccUGGCucgaGUUGCCCucuaCugCGACu -3'
miRNA:   3'- aCCUCA--ACCG----CGACGGGug--GugGCUG- -5'
24600 3' -59.9 NC_005264.1 + 37263 0.68 0.603818
Target:  5'- gUGGAcgaGGCGCUccugccgaaGCCCccuGCCGCCGAUu -3'
miRNA:   3'- -ACCUcaaCCGCGA---------CGGG---UGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 159569 0.68 0.603818
Target:  5'- -----cUGGCGCugaaUGCCCACCcACCGAg -3'
miRNA:   3'- accucaACCGCG----ACGGGUGG-UGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.