miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 5' -55.9 NC_005264.1 + 81076 0.66 0.916445
Target:  5'- gUAUgCUGcGCGCACgucucgugcuucuuGCCGCCAGaaUCGg -3'
miRNA:   3'- gAUA-GAC-CGCGUG--------------UGGCGGUUggAGC- -5'
24600 5' -55.9 NC_005264.1 + 153157 0.66 0.912359
Target:  5'- -cGUCgaGGCGCGagcCCGCCucccccaaGGCCUCGc -3'
miRNA:   3'- gaUAGa-CCGCGUgu-GGCGG--------UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 34130 0.66 0.912359
Target:  5'- -cGUCgaGGCGCGagcCCGCCucccccaaGGCCUCGc -3'
miRNA:   3'- gaUAGa-CCGCGUgu-GGCGG--------UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 139430 0.66 0.912359
Target:  5'- ---gCUGGCGUACGCgUGCuCGGCCgUCa -3'
miRNA:   3'- gauaGACCGCGUGUG-GCG-GUUGG-AGc -5'
24600 5' -55.9 NC_005264.1 + 148884 0.66 0.906323
Target:  5'- --cUUUGGCGCGCGCuuaucucucgCGCUAGCCa-- -3'
miRNA:   3'- gauAGACCGCGUGUG----------GCGGUUGGagc -5'
24600 5' -55.9 NC_005264.1 + 144788 0.66 0.906323
Target:  5'- ---cCUGGCucGCgGCGCCGCC-GCUUCGc -3'
miRNA:   3'- gauaGACCG--CG-UGUGGCGGuUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 148779 0.66 0.902589
Target:  5'- -aGUCUGGCGUGCAcguucccacccggccCCGCCAcguCCggaCGa -3'
miRNA:   3'- gaUAGACCGCGUGU---------------GGCGGUu--GGa--GC- -5'
24600 5' -55.9 NC_005264.1 + 61097 0.66 0.900054
Target:  5'- --cUUUGGggaGCGCGCCGCCAagACgCUCu -3'
miRNA:   3'- gauAGACCg--CGUGUGGCGGU--UG-GAGc -5'
24600 5' -55.9 NC_005264.1 + 60979 0.66 0.900054
Target:  5'- uUGUCUcGGCGCcgacuauCGCgGCCucguucucuGCCUCGg -3'
miRNA:   3'- gAUAGA-CCGCGu------GUGgCGGu--------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 58110 0.66 0.900054
Target:  5'- uCUGUa-GGCgGCGCuGCUGCgCGACCUCGc -3'
miRNA:   3'- -GAUAgaCCG-CGUG-UGGCG-GUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 93612 0.66 0.900054
Target:  5'- --cUCUGGCGCAgcugGCCGCUGAgcuguCCUCc -3'
miRNA:   3'- gauAGACCGCGUg---UGGCGGUU-----GGAGc -5'
24600 5' -55.9 NC_005264.1 + 45843 0.66 0.900054
Target:  5'- -gGUCUcGGUGCACcaacgacacuccGCCGCCAuaguagUCUCGg -3'
miRNA:   3'- gaUAGA-CCGCGUG------------UGGCGGUu-----GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 10923 0.66 0.900054
Target:  5'- gCUcgUUGGCGuCAUggaGCCGCCGuccCCUCc -3'
miRNA:   3'- -GAuaGACCGC-GUG---UGGCGGUu--GGAGc -5'
24600 5' -55.9 NC_005264.1 + 144431 0.66 0.900054
Target:  5'- -----gGGCGCGcCugCGCCGGCCggaaCGg -3'
miRNA:   3'- gauagaCCGCGU-GugGCGGUUGGa---GC- -5'
24600 5' -55.9 NC_005264.1 + 18140 0.66 0.900054
Target:  5'- gCUGUCUGGCGCGaGCgGCUAagagacagGCUugUCGg -3'
miRNA:   3'- -GAUAGACCGCGUgUGgCGGU--------UGG--AGC- -5'
24600 5' -55.9 NC_005264.1 + 128505 0.67 0.893553
Target:  5'- ---aCUGGaacagGCACaucACCGCC-GCCUCGa -3'
miRNA:   3'- gauaGACCg----CGUG---UGGCGGuUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 9805 0.67 0.893553
Target:  5'- -aAUCUGGaggucggcCGCACAUaaUGCCAuauCCUCGu -3'
miRNA:   3'- gaUAGACC--------GCGUGUG--GCGGUu--GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 86180 0.67 0.893553
Target:  5'- --uUCUGcCGCACcggugGCCGCauCGGCCUCGa -3'
miRNA:   3'- gauAGACcGCGUG-----UGGCG--GUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 58306 0.67 0.893553
Target:  5'- ----aUGGCGCGCuuCGCCGGCUgcccgCGa -3'
miRNA:   3'- gauagACCGCGUGugGCGGUUGGa----GC- -5'
24600 5' -55.9 NC_005264.1 + 93062 0.67 0.893553
Target:  5'- gCUGUCUGcuGCGgGagggGCCGCggCGACCUCGg -3'
miRNA:   3'- -GAUAGAC--CGCgUg---UGGCG--GUUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.