miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24601 3' -53.8 NC_005264.1 + 76140 0.67 0.930556
Target:  5'- -aCGGCGGcaaagaccGCGCGCGGCGa---- -3'
miRNA:   3'- agGUCGUCauu-----CGCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 29132 0.67 0.925137
Target:  5'- gCCagaGGCAGcaccAGUGCGCGGCGg---- -3'
miRNA:   3'- aGG---UCGUCau--UCGCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 79429 0.67 0.919467
Target:  5'- cCCAGC-GUGGGCgGUGCGGgGUc--- -3'
miRNA:   3'- aGGUCGuCAUUCG-CGCGCCgCAaaua -5'
24601 3' -53.8 NC_005264.1 + 27898 0.67 0.913545
Target:  5'- gCCAGCgucucggcgagGGUGAGCGacgacgacCGCGGUGUUg-- -3'
miRNA:   3'- aGGUCG-----------UCAUUCGC--------GCGCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 100904 0.67 0.913545
Target:  5'- cUCUAGCAGUuccucuucgcgcAAGCG-GCGGCGc---- -3'
miRNA:   3'- -AGGUCGUCA------------UUCGCgCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 137265 0.68 0.894287
Target:  5'- gCCAGCuGUGugguuGCGauucCGCGGCGUUg-- -3'
miRNA:   3'- aGGUCGuCAUu----CGC----GCGCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 22767 0.68 0.894287
Target:  5'- -gCGGCGGgcaaugAGGgGCGCGGCGa---- -3'
miRNA:   3'- agGUCGUCa-----UUCgCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 75799 0.68 0.872857
Target:  5'- cUCCAGgucgucgccguCcGUAGGCGCGCGGUGg---- -3'
miRNA:   3'- -AGGUC-----------GuCAUUCGCGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 802 0.68 0.872857
Target:  5'- cUCCAGUacGGcUGGGUGCGCGGCc----- -3'
miRNA:   3'- -AGGUCG--UC-AUUCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 73053 0.69 0.865252
Target:  5'- gCCGGCGGUAuGCGgccagagaCGUGGCGUa--- -3'
miRNA:   3'- aGGUCGUCAUuCGC--------GCGCCGCAaaua -5'
24601 3' -53.8 NC_005264.1 + 134527 0.69 0.857425
Target:  5'- aCUAGaC-GUAGGCGCGCGGCa----- -3'
miRNA:   3'- aGGUC-GuCAUUCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 131704 0.69 0.857425
Target:  5'- -gUAGC-GUGGGCcuGCGCGGCGUUg-- -3'
miRNA:   3'- agGUCGuCAUUCG--CGCGCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 61253 0.69 0.857425
Target:  5'- cUCCAGCucacGGCGCGCcucGGCGUa--- -3'
miRNA:   3'- -AGGUCGucauUCGCGCG---CCGCAaaua -5'
24601 3' -53.8 NC_005264.1 + 131565 0.69 0.849384
Target:  5'- gCCGGUAG-GAGCGgGgGGCGUUc-- -3'
miRNA:   3'- aGGUCGUCaUUCGCgCgCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 12538 0.69 0.849384
Target:  5'- gCCGGUAG-GAGCGgGgGGCGUUc-- -3'
miRNA:   3'- aGGUCGUCaUUCGCgCgCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 29392 0.69 0.841135
Target:  5'- cUUgAGCcGUAAGCGUGCGGCa----- -3'
miRNA:   3'- -AGgUCGuCAUUCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 115624 0.69 0.841135
Target:  5'- gCCGGCAGUcgaAAGgGCGCcGCGUa--- -3'
miRNA:   3'- aGGUCGUCA---UUCgCGCGcCGCAaaua -5'
24601 3' -53.8 NC_005264.1 + 144893 0.69 0.832686
Target:  5'- uUCUucuGGgcGGCGCGCGGCGUUa-- -3'
miRNA:   3'- -AGGucgUCauUCGCGCGCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 126098 0.69 0.832686
Target:  5'- gUCUGGcCAGUAGGCgggcaaggaauGCGCGGCGgcUGa -3'
miRNA:   3'- -AGGUC-GUCAUUCG-----------CGCGCCGCaaAUa -5'
24601 3' -53.8 NC_005264.1 + 8315 0.69 0.832686
Target:  5'- gCCGGCAcgcuuGUuuGCGCGCGGCa----- -3'
miRNA:   3'- aGGUCGU-----CAuuCGCGCGCCGcaaaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.