miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24602 3' -57 NC_005264.1 + 92110 0.66 0.886913
Target:  5'- -gUCGCUGCGGCGgcacacagcgcaGCGUucggcGACCgagUGGGAg -3'
miRNA:   3'- aaAGUGGUGCCGC------------UGCA-----CUGG---ACCCU- -5'
24602 3' -57 NC_005264.1 + 107713 0.66 0.886231
Target:  5'- ---aGCgCACGGCGGggugucgaacccuCGUGGCUUGGGc -3'
miRNA:   3'- aaagUG-GUGCCGCU-------------GCACUGGACCCu -5'
24602 3' -57 NC_005264.1 + 68496 0.66 0.872858
Target:  5'- -aUCgaaCGCGGCGACGgcuuUCUGGGGu -3'
miRNA:   3'- aaAGug-GUGCCGCUGCacu-GGACCCU- -5'
24602 3' -57 NC_005264.1 + 79119 0.66 0.872858
Target:  5'- -cUCGgCACGGCGGCGUGcGCUUGc-- -3'
miRNA:   3'- aaAGUgGUGCCGCUGCAC-UGGACccu -5'
24602 3' -57 NC_005264.1 + 158242 0.66 0.872858
Target:  5'- --aCGCCGCcGCGGCGcUGGCg-GGGAg -3'
miRNA:   3'- aaaGUGGUGcCGCUGC-ACUGgaCCCU- -5'
24602 3' -57 NC_005264.1 + 87039 0.66 0.872858
Target:  5'- --gCGCCuACGGaCGGCGacGACCUGGaGGc -3'
miRNA:   3'- aaaGUGG-UGCC-GCUGCa-CUGGACC-CU- -5'
24602 3' -57 NC_005264.1 + 39215 0.66 0.872858
Target:  5'- --aCGCCGCcGCGGCGcUGGCg-GGGAg -3'
miRNA:   3'- aaaGUGGUGcCGCUGC-ACUGgaCCCU- -5'
24602 3' -57 NC_005264.1 + 19104 0.66 0.86551
Target:  5'- --gCACCGCGGCGGCGcggaGACgagcacuacgaUGGGGc -3'
miRNA:   3'- aaaGUGGUGCCGCUGCa---CUGg----------ACCCU- -5'
24602 3' -57 NC_005264.1 + 94409 0.66 0.855648
Target:  5'- ---gACCGCGGCG-CGgacugcgcgaucgcUGACgUGGGAu -3'
miRNA:   3'- aaagUGGUGCCGCuGC--------------ACUGgACCCU- -5'
24602 3' -57 NC_005264.1 + 150913 0.67 0.850197
Target:  5'- cUUUCACCccaGCGGCGAcCGUGGgaaaaUCUGcGGGc -3'
miRNA:   3'- -AAAGUGG---UGCCGCU-GCACU-----GGAC-CCU- -5'
24602 3' -57 NC_005264.1 + 72086 0.67 0.850197
Target:  5'- ---aGCCACGGCGGCauaGGCCUGuacauGGAc -3'
miRNA:   3'- aaagUGGUGCCGCUGca-CUGGAC-----CCU- -5'
24602 3' -57 NC_005264.1 + 31887 0.67 0.850197
Target:  5'- cUUUCACCccaGCGGCGAcCGUGGgaaaaUCUGcGGGc -3'
miRNA:   3'- -AAAGUGG---UGCCGCU-GCACU-----GGAC-CCU- -5'
24602 3' -57 NC_005264.1 + 67745 0.67 0.834105
Target:  5'- cUUCGCguaucuCGGCGcaggucgcaguuGCGUGGCUUGGGGu -3'
miRNA:   3'- aAAGUGgu----GCCGC------------UGCACUGGACCCU- -5'
24602 3' -57 NC_005264.1 + 92489 0.67 0.834105
Target:  5'- --aCACUGCGGUGGCGgUGcGCCUGGc- -3'
miRNA:   3'- aaaGUGGUGCCGCUGC-AC-UGGACCcu -5'
24602 3' -57 NC_005264.1 + 135771 0.67 0.825784
Target:  5'- --gCGCaCGCGGCGAUcagagaGGCCUGGGu -3'
miRNA:   3'- aaaGUG-GUGCCGCUGca----CUGGACCCu -5'
24602 3' -57 NC_005264.1 + 66969 0.67 0.817289
Target:  5'- --cCAUCGCGGCGuugGUGuacGCCUGGGc -3'
miRNA:   3'- aaaGUGGUGCCGCug-CAC---UGGACCCu -5'
24602 3' -57 NC_005264.1 + 99760 0.68 0.79981
Target:  5'- -cUCGCC-CGGCGAgGaGACCauacGGGAc -3'
miRNA:   3'- aaAGUGGuGCCGCUgCaCUGGa---CCCU- -5'
24602 3' -57 NC_005264.1 + 21026 0.68 0.790842
Target:  5'- -cUCACUuuuCGGCGACGaggaccaugGACCUGGc- -3'
miRNA:   3'- aaAGUGGu--GCCGCUGCa--------CUGGACCcu -5'
24602 3' -57 NC_005264.1 + 82335 0.68 0.753649
Target:  5'- --gCACCGCGGCGAUGUucucgcucucGGCCUuGGcGGc -3'
miRNA:   3'- aaaGUGGUGCCGCUGCA----------CUGGA-CC-CU- -5'
24602 3' -57 NC_005264.1 + 147549 0.69 0.701862
Target:  5'- cUUUC-CCGCGGCgcgaaguggccgccGACGUGugCgacgGGGAa -3'
miRNA:   3'- -AAAGuGGUGCCG--------------CUGCACugGa---CCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.