miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24602 5' -51.5 NC_005264.1 + 58886 0.66 0.991635
Target:  5'- gCAgcgCCACGcGuUCGCGCaUAGCggaUGCCg -3'
miRNA:   3'- -GUa--GGUGC-C-AGUGCG-AUUGaugACGG- -5'
24602 5' -51.5 NC_005264.1 + 51092 0.66 0.991635
Target:  5'- -cUUCGCGGUCGCcgguGCUGcgguCUGCUcgcGCCu -3'
miRNA:   3'- guAGGUGCCAGUG----CGAUu---GAUGA---CGG- -5'
24602 5' -51.5 NC_005264.1 + 57559 0.66 0.991288
Target:  5'- aCGUCCGCGGUaccguuuugggccuUugGC-GACUcgccGCUGCg -3'
miRNA:   3'- -GUAGGUGCCA--------------GugCGaUUGA----UGACGg -5'
24602 5' -51.5 NC_005264.1 + 53255 0.66 0.990432
Target:  5'- --cCCGCGGgCGCGUgucUGGCuUGCUGUCc -3'
miRNA:   3'- guaGGUGCCaGUGCG---AUUG-AUGACGG- -5'
24602 5' -51.5 NC_005264.1 + 152078 0.66 0.990432
Target:  5'- uGUCgGCGGUCuGCGCUAccacCUGaucgaucaUGCCg -3'
miRNA:   3'- gUAGgUGCCAG-UGCGAUu---GAUg-------ACGG- -5'
24602 5' -51.5 NC_005264.1 + 15901 0.66 0.990432
Target:  5'- cCAUCCAgccUCuGCGCcacgAACUACUGCCc -3'
miRNA:   3'- -GUAGGUgccAG-UGCGa---UUGAUGACGG- -5'
24602 5' -51.5 NC_005264.1 + 43656 0.66 0.989096
Target:  5'- gGUgUACGGUCgGCGC--GCUGCgcGCCg -3'
miRNA:   3'- gUAgGUGCCAG-UGCGauUGAUGa-CGG- -5'
24602 5' -51.5 NC_005264.1 + 58740 0.66 0.989096
Target:  5'- gCAUCCGCGGcCGcCGCUGcGCUAUcagagGCg -3'
miRNA:   3'- -GUAGGUGCCaGU-GCGAU-UGAUGa----CGg -5'
24602 5' -51.5 NC_005264.1 + 42067 0.66 0.989096
Target:  5'- --cCCGCGG-CGCGUggcgucAGCUGC-GCCg -3'
miRNA:   3'- guaGGUGCCaGUGCGa-----UUGAUGaCGG- -5'
24602 5' -51.5 NC_005264.1 + 162682 0.66 0.989096
Target:  5'- gGUgUACGGUCgGCGC--GCUGCgcGCCg -3'
miRNA:   3'- gUAgGUGCCAG-UGCGauUGAUGa-CGG- -5'
24602 5' -51.5 NC_005264.1 + 93035 0.66 0.989096
Target:  5'- uCGUCCGCGccgaAUGCguGCUGCUGCg -3'
miRNA:   3'- -GUAGGUGCcag-UGCGauUGAUGACGg -5'
24602 5' -51.5 NC_005264.1 + 103576 0.66 0.987619
Target:  5'- gGUUUACGGcgACGCUGAUgaUGCUaGCCg -3'
miRNA:   3'- gUAGGUGCCagUGCGAUUG--AUGA-CGG- -5'
24602 5' -51.5 NC_005264.1 + 64264 0.67 0.985993
Target:  5'- --gCCuauCGGUgAgGCUGGCUACgcgggUGCCg -3'
miRNA:   3'- guaGGu--GCCAgUgCGAUUGAUG-----ACGG- -5'
24602 5' -51.5 NC_005264.1 + 130953 0.67 0.984207
Target:  5'- --cCCACGGUCGcCGCUGgggugaaaguccACU--UGCCu -3'
miRNA:   3'- guaGGUGCCAGU-GCGAU------------UGAugACGG- -5'
24602 5' -51.5 NC_005264.1 + 23603 0.67 0.984207
Target:  5'- uCGUCuCGCGGUCuacuuuugcuCGCUGGCgauugGCUuagaGCCa -3'
miRNA:   3'- -GUAG-GUGCCAGu---------GCGAUUGa----UGA----CGG- -5'
24602 5' -51.5 NC_005264.1 + 38457 0.67 0.982254
Target:  5'- uCAUCCuuccgCACGgUAGCaUGCUGCCg -3'
miRNA:   3'- -GUAGGugccaGUGCgAUUG-AUGACGG- -5'
24602 5' -51.5 NC_005264.1 + 6885 0.67 0.980125
Target:  5'- -cUCgGCGcGUguUGCUGuugccuugGCUGCUGCCg -3'
miRNA:   3'- guAGgUGC-CAguGCGAU--------UGAUGACGG- -5'
24602 5' -51.5 NC_005264.1 + 125911 0.67 0.980125
Target:  5'- -cUCgGCGcGUguUGCUGuugccuugGCUGCUGCCg -3'
miRNA:   3'- guAGgUGC-CAguGCGAU--------UGAUGACGG- -5'
24602 5' -51.5 NC_005264.1 + 30389 0.67 0.979677
Target:  5'- gCGUCUcggcggcgGCGGUCGCGCgccggugcggagAGCUGCgGCg -3'
miRNA:   3'- -GUAGG--------UGCCAGUGCGa-----------UUGAUGaCGg -5'
24602 5' -51.5 NC_005264.1 + 149416 0.67 0.979677
Target:  5'- gCGUCUcggcggcgGCGGUCGCGCgccggugcggagAGCUGCgGCg -3'
miRNA:   3'- -GUAGG--------UGCCAGUGCGa-----------UUGAUGaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.