miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24603 3' -55 NC_005264.1 + 14834 0.65 0.929593
Target:  5'- -cGGCGGCuauGGCGACgaGGaCUCCAGa- -3'
miRNA:   3'- gaUCGUCGu--CCGUUG--UCaGAGGUCga -5'
24603 3' -55 NC_005264.1 + 25723 0.65 0.929593
Target:  5'- -cGGCAGCGGuGCGuacuCGGUCgcggagaggCCAGUg -3'
miRNA:   3'- gaUCGUCGUC-CGUu---GUCAGa--------GGUCGa -5'
24603 3' -55 NC_005264.1 + 102759 0.66 0.918455
Target:  5'- -cGGCAGUAGGCuaggGGCGGg--CCAGUUc -3'
miRNA:   3'- gaUCGUCGUCCG----UUGUCagaGGUCGA- -5'
24603 3' -55 NC_005264.1 + 36482 0.66 0.912512
Target:  5'- -cAGCGGCaAGGCGGCGuUUUCguGCg -3'
miRNA:   3'- gaUCGUCG-UCCGUUGUcAGAGguCGa -5'
24603 3' -55 NC_005264.1 + 103681 0.66 0.90632
Target:  5'- aCUGGCAGCuGGGCGAgggggaAGUUgagggCCAGUg -3'
miRNA:   3'- -GAUCGUCG-UCCGUUg-----UCAGa----GGUCGa -5'
24603 3' -55 NC_005264.1 + 59856 0.66 0.90632
Target:  5'- --uGguGCAGGCcgccACGGUCaugCUAGCUg -3'
miRNA:   3'- gauCguCGUCCGu---UGUCAGa--GGUCGA- -5'
24603 3' -55 NC_005264.1 + 26367 0.66 0.905688
Target:  5'- --cGCGGCAGGCuGCGcggcgccGUCUCUgAGCg -3'
miRNA:   3'- gauCGUCGUCCGuUGU-------CAGAGG-UCGa -5'
24603 3' -55 NC_005264.1 + 97540 0.66 0.899883
Target:  5'- gUGGCAGCGGGCAAgAGcCagaCAuGCUg -3'
miRNA:   3'- gAUCGUCGUCCGUUgUCaGag-GU-CGA- -5'
24603 3' -55 NC_005264.1 + 11004 0.66 0.899883
Target:  5'- -gAGCGGC-GGCccCAGUCUUCcGCUa -3'
miRNA:   3'- gaUCGUCGuCCGuuGUCAGAGGuCGA- -5'
24603 3' -55 NC_005264.1 + 43400 0.66 0.899883
Target:  5'- -gGGCGGCcuGGGCAGCgAGaUCgcccgCCAGCc -3'
miRNA:   3'- gaUCGUCG--UCCGUUG-UC-AGa----GGUCGa -5'
24603 3' -55 NC_005264.1 + 117047 0.67 0.893203
Target:  5'- --cGCGGCGGcccagaccGCAAUAGccgCUCCGGCg -3'
miRNA:   3'- gauCGUCGUC--------CGUUGUCa--GAGGUCGa -5'
24603 3' -55 NC_005264.1 + 74288 0.67 0.886283
Target:  5'- aUGGCAGCAuuaGCGGCGGUCUggcgCgCGGCa -3'
miRNA:   3'- gAUCGUCGUc--CGUUGUCAGA----G-GUCGa -5'
24603 3' -55 NC_005264.1 + 64060 0.67 0.879128
Target:  5'- aUAGUAGUAGGCGcaGGUCU-CGGCc -3'
miRNA:   3'- gAUCGUCGUCCGUugUCAGAgGUCGa -5'
24603 3' -55 NC_005264.1 + 22764 0.67 0.871743
Target:  5'- aUAGCGGCGGGCAAUgAGgggCgCGGCg -3'
miRNA:   3'- gAUCGUCGUCCGUUG-UCagaG-GUCGa -5'
24603 3' -55 NC_005264.1 + 82859 0.67 0.871743
Target:  5'- --cGCGGCcGGCAuCGGUCUCUguuuGCUg -3'
miRNA:   3'- gauCGUCGuCCGUuGUCAGAGGu---CGA- -5'
24603 3' -55 NC_005264.1 + 67515 0.67 0.864133
Target:  5'- --cGCGGCGcccGGCGGCGGcaaUCUCCAuGCg -3'
miRNA:   3'- gauCGUCGU---CCGUUGUC---AGAGGU-CGa -5'
24603 3' -55 NC_005264.1 + 6876 0.67 0.864133
Target:  5'- -cGGCAGcCAGaGCGuccgcgagccgcGCAGUC-CCAGCg -3'
miRNA:   3'- gaUCGUC-GUC-CGU------------UGUCAGaGGUCGa -5'
24603 3' -55 NC_005264.1 + 49053 0.67 0.864133
Target:  5'- -gGGCAGCGGGUGGCGGUacauuuuauUUCCGacGCa -3'
miRNA:   3'- gaUCGUCGUCCGUUGUCA---------GAGGU--CGa -5'
24603 3' -55 NC_005264.1 + 86484 0.68 0.856304
Target:  5'- -gAGCAGUGGGUu-CAGgcucgccCUCCAGCg -3'
miRNA:   3'- gaUCGUCGUCCGuuGUCa------GAGGUCGa -5'
24603 3' -55 NC_005264.1 + 31188 0.68 0.856304
Target:  5'- uCUGGCGGCGGGCAccGCAGa--CCgaGGCg -3'
miRNA:   3'- -GAUCGUCGUCCGU--UGUCagaGG--UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.