miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24603 3' -55 NC_005264.1 + 55518 1.09 0.003024
Target:  5'- aCUAGCAGCAGGCAACAGUCUCCAGCUg -3'
miRNA:   3'- -GAUCGUCGUCCGUUGUCAGAGGUCGA- -5'
24603 3' -55 NC_005264.1 + 89682 0.78 0.296414
Target:  5'- gCUGGCGGUGGGCAugAGcgCUaCCAGCUg -3'
miRNA:   3'- -GAUCGUCGUCCGUugUCa-GA-GGUCGA- -5'
24603 3' -55 NC_005264.1 + 19846 0.75 0.472287
Target:  5'- -gGGCuAGUAGuGUAACAGUcCUCCAGCUu -3'
miRNA:   3'- gaUCG-UCGUC-CGUUGUCA-GAGGUCGA- -5'
24603 3' -55 NC_005264.1 + 39088 0.73 0.562145
Target:  5'- -cGGCucGGCGGGCAGCGgcGUCUggaCCAGCUg -3'
miRNA:   3'- gaUCG--UCGUCCGUUGU--CAGA---GGUCGA- -5'
24603 3' -55 NC_005264.1 + 158115 0.73 0.562145
Target:  5'- -cGGCucGGCGGGCAGCGgcGUCUggaCCAGCUg -3'
miRNA:   3'- gaUCG--UCGUCCGUUGU--CAGA---GGUCGA- -5'
24603 3' -55 NC_005264.1 + 51858 0.72 0.603656
Target:  5'- --cGCAGUAGGgaGACGGUCUCCucgGGCg -3'
miRNA:   3'- gauCGUCGUCCg-UUGUCAGAGG---UCGa -5'
24603 3' -55 NC_005264.1 + 89522 0.72 0.639236
Target:  5'- -gAGCGGCAGGCggccuauugauuggcGcggGCAGUgUCCGGCg -3'
miRNA:   3'- gaUCGUCGUCCG---------------U---UGUCAgAGGUCGa -5'
24603 3' -55 NC_005264.1 + 4444 0.71 0.655975
Target:  5'- -gGGCGGCGGGCAuauACGG-CUCCcauaGGCg -3'
miRNA:   3'- gaUCGUCGUCCGU---UGUCaGAGG----UCGa -5'
24603 3' -55 NC_005264.1 + 131436 0.71 0.687195
Target:  5'- -cGGCGGCAGGUAACGGgaacgaagaUCgCAGCa -3'
miRNA:   3'- gaUCGUCGUCCGUUGUCag-------AG-GUCGa -5'
24603 3' -55 NC_005264.1 + 156586 0.71 0.694428
Target:  5'- -cGGCGGCgacgaccgcgacggAGGCGGCaAGUCUCgCGGCg -3'
miRNA:   3'- gaUCGUCG--------------UCCGUUG-UCAGAG-GUCGa -5'
24603 3' -55 NC_005264.1 + 37559 0.71 0.694428
Target:  5'- -cGGCGGCgacgaccgcgacggAGGCGGCaAGUCUCgCGGCg -3'
miRNA:   3'- gaUCGUCG--------------UCCGUUG-UCAGAG-GUCGa -5'
24603 3' -55 NC_005264.1 + 74590 0.7 0.717984
Target:  5'- -aGGCGGCGGGCaAACAGUaUCUGGUc -3'
miRNA:   3'- gaUCGUCGUCCG-UUGUCAgAGGUCGa -5'
24603 3' -55 NC_005264.1 + 142964 0.7 0.717984
Target:  5'- gCUAGC-GCGGccGCGGCGGUCUCUcgGGCa -3'
miRNA:   3'- -GAUCGuCGUC--CGUUGUCAGAGG--UCGa -5'
24603 3' -55 NC_005264.1 + 159991 0.7 0.738142
Target:  5'- --cGCAGCGGGCGACGG-CgCgAGCg -3'
miRNA:   3'- gauCGUCGUCCGUUGUCaGaGgUCGa -5'
24603 3' -55 NC_005264.1 + 40964 0.7 0.738142
Target:  5'- --cGCAGCGGGCGACGG-CgCgAGCg -3'
miRNA:   3'- gauCGUCGUCCGUUGUCaGaGgUCGa -5'
24603 3' -55 NC_005264.1 + 74392 0.7 0.748081
Target:  5'- -gGGUAGCGGGCGucgaACAGgUUCUGGCUg -3'
miRNA:   3'- gaUCGUCGUCCGU----UGUCaGAGGUCGA- -5'
24603 3' -55 NC_005264.1 + 138792 0.7 0.748081
Target:  5'- aUAGCAGCuaucuaacAGGCAACGGcgacCUCCGGgUg -3'
miRNA:   3'- gAUCGUCG--------UCCGUUGUCa---GAGGUCgA- -5'
24603 3' -55 NC_005264.1 + 15588 0.7 0.757913
Target:  5'- -aAGCuuGCGGGCGcagcuGCGG-CUCCGGCa -3'
miRNA:   3'- gaUCGu-CGUCCGU-----UGUCaGAGGUCGa -5'
24603 3' -55 NC_005264.1 + 89165 0.69 0.777218
Target:  5'- aCUGGCAGgcCAGGCAaguAgGGUCgucCCGGCg -3'
miRNA:   3'- -GAUCGUC--GUCCGU---UgUCAGa--GGUCGa -5'
24603 3' -55 NC_005264.1 + 145901 0.69 0.777218
Target:  5'- gCUGGCgAGCuGG-AACAG-CUCCGGCg -3'
miRNA:   3'- -GAUCG-UCGuCCgUUGUCaGAGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.