miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24603 3' -55 NC_005264.1 + 16568 0.68 0.856304
Target:  5'- -gGGCGGCgccgGGGCGGCGGcgcacaugaCUCCGGCc -3'
miRNA:   3'- gaUCGUCG----UCCGUUGUCa--------GAGGUCGa -5'
24603 3' -55 NC_005264.1 + 9857 0.68 0.85551
Target:  5'- -aAGCGGCcccuaucGGGC-GCGGUC-CCGGCg -3'
miRNA:   3'- gaUCGUCG-------UCCGuUGUCAGaGGUCGa -5'
24603 3' -55 NC_005264.1 + 128883 0.68 0.85551
Target:  5'- -aAGCGGCcccuaucGGGC-GCGGUC-CCGGCg -3'
miRNA:   3'- gaUCGUCG-------UCCGuUGUCAGaGGUCGa -5'
24603 3' -55 NC_005264.1 + 49623 0.68 0.848263
Target:  5'- cCUGGgAGCGGGUAAUAGUCaUC-GCUa -3'
miRNA:   3'- -GAUCgUCGUCCGUUGUCAGaGGuCGA- -5'
24603 3' -55 NC_005264.1 + 157383 0.68 0.848263
Target:  5'- -gGGCGGCGGG--GCGGUuaggaccucCUCCGGCg -3'
miRNA:   3'- gaUCGUCGUCCguUGUCA---------GAGGUCGa -5'
24603 3' -55 NC_005264.1 + 38356 0.68 0.848263
Target:  5'- -gGGCGGCGGG--GCGGUuaggaccucCUCCGGCg -3'
miRNA:   3'- gaUCGUCGUCCguUGUCA---------GAGGUCGa -5'
24603 3' -55 NC_005264.1 + 127843 0.68 0.848263
Target:  5'- --cGCGGCGGcCGGCGGUCUagaacCCGGCg -3'
miRNA:   3'- gauCGUCGUCcGUUGUCAGA-----GGUCGa -5'
24603 3' -55 NC_005264.1 + 56431 0.68 0.840016
Target:  5'- -gAGCuuCGGGUcuuuGCGGUUUCCAGCUu -3'
miRNA:   3'- gaUCGucGUCCGu---UGUCAGAGGUCGA- -5'
24603 3' -55 NC_005264.1 + 127630 0.68 0.831572
Target:  5'- uUAG-AGaugaGCAACAGUCUCCGGCg -3'
miRNA:   3'- gAUCgUCguc-CGUUGUCAGAGGUCGa -5'
24603 3' -55 NC_005264.1 + 744 0.68 0.814122
Target:  5'- cCUAGCAGCu--UAAUGGUCUUCGGCg -3'
miRNA:   3'- -GAUCGUCGuccGUUGUCAGAGGUCGa -5'
24603 3' -55 NC_005264.1 + 145901 0.69 0.777218
Target:  5'- gCUGGCgAGCuGG-AACAG-CUCCGGCg -3'
miRNA:   3'- -GAUCG-UCGuCCgUUGUCaGAGGUCGa -5'
24603 3' -55 NC_005264.1 + 12289 0.69 0.777218
Target:  5'- cCUGGCGGCAgGGCGgugcGCAcuGUacuaUCCAGCUu -3'
miRNA:   3'- -GAUCGUCGU-CCGU----UGU--CAg---AGGUCGA- -5'
24603 3' -55 NC_005264.1 + 89165 0.69 0.777218
Target:  5'- aCUGGCAGgcCAGGCAaguAgGGUCgucCCGGCg -3'
miRNA:   3'- -GAUCGUC--GUCCGU---UgUCAGa--GGUCGa -5'
24603 3' -55 NC_005264.1 + 15588 0.7 0.757913
Target:  5'- -aAGCuuGCGGGCGcagcuGCGG-CUCCGGCa -3'
miRNA:   3'- gaUCGu-CGUCCGU-----UGUCaGAGGUCGa -5'
24603 3' -55 NC_005264.1 + 74392 0.7 0.748081
Target:  5'- -gGGUAGCGGGCGucgaACAGgUUCUGGCUg -3'
miRNA:   3'- gaUCGUCGUCCGU----UGUCaGAGGUCGA- -5'
24603 3' -55 NC_005264.1 + 138792 0.7 0.748081
Target:  5'- aUAGCAGCuaucuaacAGGCAACGGcgacCUCCGGgUg -3'
miRNA:   3'- gAUCGUCG--------UCCGUUGUCa---GAGGUCgA- -5'
24603 3' -55 NC_005264.1 + 40964 0.7 0.738142
Target:  5'- --cGCAGCGGGCGACGG-CgCgAGCg -3'
miRNA:   3'- gauCGUCGUCCGUUGUCaGaGgUCGa -5'
24603 3' -55 NC_005264.1 + 159991 0.7 0.738142
Target:  5'- --cGCAGCGGGCGACGG-CgCgAGCg -3'
miRNA:   3'- gauCGUCGUCCGUUGUCaGaGgUCGa -5'
24603 3' -55 NC_005264.1 + 142964 0.7 0.717984
Target:  5'- gCUAGC-GCGGccGCGGCGGUCUCUcgGGCa -3'
miRNA:   3'- -GAUCGuCGUC--CGUUGUCAGAGG--UCGa -5'
24603 3' -55 NC_005264.1 + 74590 0.7 0.717984
Target:  5'- -aGGCGGCGGGCaAACAGUaUCUGGUc -3'
miRNA:   3'- gaUCGUCGUCCG-UUGUCAgAGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.