miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24603 3' -55 NC_005264.1 + 744 0.68 0.814122
Target:  5'- cCUAGCAGCu--UAAUGGUCUUCGGCg -3'
miRNA:   3'- -GAUCGUCGuccGUUGUCAGAGGUCGa -5'
24603 3' -55 NC_005264.1 + 4444 0.71 0.655975
Target:  5'- -gGGCGGCGGGCAuauACGG-CUCCcauaGGCg -3'
miRNA:   3'- gaUCGUCGUCCGU---UGUCaGAGG----UCGa -5'
24603 3' -55 NC_005264.1 + 6876 0.67 0.864133
Target:  5'- -cGGCAGcCAGaGCGuccgcgagccgcGCAGUC-CCAGCg -3'
miRNA:   3'- gaUCGUC-GUC-CGU------------UGUCAGaGGUCGa -5'
24603 3' -55 NC_005264.1 + 9857 0.68 0.85551
Target:  5'- -aAGCGGCcccuaucGGGC-GCGGUC-CCGGCg -3'
miRNA:   3'- gaUCGUCG-------UCCGuUGUCAGaGGUCGa -5'
24603 3' -55 NC_005264.1 + 11004 0.66 0.899883
Target:  5'- -gAGCGGC-GGCccCAGUCUUCcGCUa -3'
miRNA:   3'- gaUCGUCGuCCGuuGUCAGAGGuCGA- -5'
24603 3' -55 NC_005264.1 + 12289 0.69 0.777218
Target:  5'- cCUGGCGGCAgGGCGgugcGCAcuGUacuaUCCAGCUu -3'
miRNA:   3'- -GAUCGUCGU-CCGU----UGU--CAg---AGGUCGA- -5'
24603 3' -55 NC_005264.1 + 14834 0.65 0.929593
Target:  5'- -cGGCGGCuauGGCGACgaGGaCUCCAGa- -3'
miRNA:   3'- gaUCGUCGu--CCGUUG--UCaGAGGUCga -5'
24603 3' -55 NC_005264.1 + 15588 0.7 0.757913
Target:  5'- -aAGCuuGCGGGCGcagcuGCGG-CUCCGGCa -3'
miRNA:   3'- gaUCGu-CGUCCGU-----UGUCaGAGGUCGa -5'
24603 3' -55 NC_005264.1 + 16568 0.68 0.856304
Target:  5'- -gGGCGGCgccgGGGCGGCGGcgcacaugaCUCCGGCc -3'
miRNA:   3'- gaUCGUCG----UCCGUUGUCa--------GAGGUCGa -5'
24603 3' -55 NC_005264.1 + 19846 0.75 0.472287
Target:  5'- -gGGCuAGUAGuGUAACAGUcCUCCAGCUu -3'
miRNA:   3'- gaUCG-UCGUC-CGUUGUCA-GAGGUCGA- -5'
24603 3' -55 NC_005264.1 + 22764 0.67 0.871743
Target:  5'- aUAGCGGCGGGCAAUgAGgggCgCGGCg -3'
miRNA:   3'- gAUCGUCGUCCGUUG-UCagaG-GUCGa -5'
24603 3' -55 NC_005264.1 + 25723 0.65 0.929593
Target:  5'- -cGGCAGCGGuGCGuacuCGGUCgcggagaggCCAGUg -3'
miRNA:   3'- gaUCGUCGUC-CGUu---GUCAGa--------GGUCGa -5'
24603 3' -55 NC_005264.1 + 26367 0.66 0.905688
Target:  5'- --cGCGGCAGGCuGCGcggcgccGUCUCUgAGCg -3'
miRNA:   3'- gauCGUCGUCCGuUGU-------CAGAGG-UCGa -5'
24603 3' -55 NC_005264.1 + 31188 0.68 0.856304
Target:  5'- uCUGGCGGCGGGCAccGCAGa--CCgaGGCg -3'
miRNA:   3'- -GAUCGUCGUCCGU--UGUCagaGG--UCGa -5'
24603 3' -55 NC_005264.1 + 36482 0.66 0.912512
Target:  5'- -cAGCGGCaAGGCGGCGuUUUCguGCg -3'
miRNA:   3'- gaUCGUCG-UCCGUUGUcAGAGguCGa -5'
24603 3' -55 NC_005264.1 + 37559 0.71 0.694428
Target:  5'- -cGGCGGCgacgaccgcgacggAGGCGGCaAGUCUCgCGGCg -3'
miRNA:   3'- gaUCGUCG--------------UCCGUUG-UCAGAG-GUCGa -5'
24603 3' -55 NC_005264.1 + 38356 0.68 0.848263
Target:  5'- -gGGCGGCGGG--GCGGUuaggaccucCUCCGGCg -3'
miRNA:   3'- gaUCGUCGUCCguUGUCA---------GAGGUCGa -5'
24603 3' -55 NC_005264.1 + 39088 0.73 0.562145
Target:  5'- -cGGCucGGCGGGCAGCGgcGUCUggaCCAGCUg -3'
miRNA:   3'- gaUCG--UCGUCCGUUGU--CAGA---GGUCGA- -5'
24603 3' -55 NC_005264.1 + 40964 0.7 0.738142
Target:  5'- --cGCAGCGGGCGACGG-CgCgAGCg -3'
miRNA:   3'- gauCGUCGUCCGUUGUCaGaGgUCGa -5'
24603 3' -55 NC_005264.1 + 43400 0.66 0.899883
Target:  5'- -gGGCGGCcuGGGCAGCgAGaUCgcccgCCAGCc -3'
miRNA:   3'- gaUCGUCG--UCCGUUG-UC-AGa----GGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.