miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24603 3' -55 NC_005264.1 + 55518 1.09 0.003024
Target:  5'- aCUAGCAGCAGGCAACAGUCUCCAGCUg -3'
miRNA:   3'- -GAUCGUCGUCCGUUGUCAGAGGUCGA- -5'
24603 3' -55 NC_005264.1 + 6876 0.67 0.864133
Target:  5'- -cGGCAGcCAGaGCGuccgcgagccgcGCAGUC-CCAGCg -3'
miRNA:   3'- gaUCGUC-GUC-CGU------------UGUCAGaGGUCGa -5'
24603 3' -55 NC_005264.1 + 82859 0.67 0.871743
Target:  5'- --cGCGGCcGGCAuCGGUCUCUguuuGCUg -3'
miRNA:   3'- gauCGUCGuCCGUuGUCAGAGGu---CGA- -5'
24603 3' -55 NC_005264.1 + 25723 0.65 0.929593
Target:  5'- -cGGCAGCGGuGCGuacuCGGUCgcggagaggCCAGUg -3'
miRNA:   3'- gaUCGUCGUC-CGUu---GUCAGa--------GGUCGa -5'
24603 3' -55 NC_005264.1 + 4444 0.71 0.655975
Target:  5'- -gGGCGGCGGGCAuauACGG-CUCCcauaGGCg -3'
miRNA:   3'- gaUCGUCGUCCGU---UGUCaGAGG----UCGa -5'
24603 3' -55 NC_005264.1 + 156586 0.71 0.694428
Target:  5'- -cGGCGGCgacgaccgcgacggAGGCGGCaAGUCUCgCGGCg -3'
miRNA:   3'- gaUCGUCG--------------UCCGUUG-UCAGAG-GUCGa -5'
24603 3' -55 NC_005264.1 + 138792 0.7 0.748081
Target:  5'- aUAGCAGCuaucuaacAGGCAACGGcgacCUCCGGgUg -3'
miRNA:   3'- gAUCGUCG--------UCCGUUGUCa---GAGGUCgA- -5'
24603 3' -55 NC_005264.1 + 145901 0.69 0.777218
Target:  5'- gCUGGCgAGCuGG-AACAG-CUCCGGCg -3'
miRNA:   3'- -GAUCG-UCGuCCgUUGUCaGAGGUCGa -5'
24603 3' -55 NC_005264.1 + 56431 0.68 0.840016
Target:  5'- -gAGCuuCGGGUcuuuGCGGUUUCCAGCUu -3'
miRNA:   3'- gaUCGucGUCCGu---UGUCAGAGGUCGA- -5'
24603 3' -55 NC_005264.1 + 16568 0.68 0.856304
Target:  5'- -gGGCGGCgccgGGGCGGCGGcgcacaugaCUCCGGCc -3'
miRNA:   3'- gaUCGUCG----UCCGUUGUCa--------GAGGUCGa -5'
24603 3' -55 NC_005264.1 + 128883 0.68 0.85551
Target:  5'- -aAGCGGCcccuaucGGGC-GCGGUC-CCGGCg -3'
miRNA:   3'- gaUCGUCG-------UCCGuUGUCAGaGGUCGa -5'
24603 3' -55 NC_005264.1 + 744 0.68 0.814122
Target:  5'- cCUAGCAGCu--UAAUGGUCUUCGGCg -3'
miRNA:   3'- -GAUCGUCGuccGUUGUCAGAGGUCGa -5'
24603 3' -55 NC_005264.1 + 158115 0.73 0.562145
Target:  5'- -cGGCucGGCGGGCAGCGgcGUCUggaCCAGCUg -3'
miRNA:   3'- gaUCG--UCGUCCGUUGU--CAGA---GGUCGA- -5'
24603 3' -55 NC_005264.1 + 86484 0.68 0.856304
Target:  5'- -gAGCAGUGGGUu-CAGgcucgccCUCCAGCg -3'
miRNA:   3'- gaUCGUCGUCCGuuGUCa------GAGGUCGa -5'
24603 3' -55 NC_005264.1 + 51858 0.72 0.603656
Target:  5'- --cGCAGUAGGgaGACGGUCUCCucgGGCg -3'
miRNA:   3'- gauCGUCGUCCg-UUGUCAGAGG---UCGa -5'
24603 3' -55 NC_005264.1 + 12289 0.69 0.777218
Target:  5'- cCUGGCGGCAgGGCGgugcGCAcuGUacuaUCCAGCUu -3'
miRNA:   3'- -GAUCGUCGU-CCGU----UGU--CAg---AGGUCGA- -5'
24603 3' -55 NC_005264.1 + 31188 0.68 0.856304
Target:  5'- uCUGGCGGCGGGCAccGCAGa--CCgaGGCg -3'
miRNA:   3'- -GAUCGUCGUCCGU--UGUCagaGG--UCGa -5'
24603 3' -55 NC_005264.1 + 67515 0.67 0.864133
Target:  5'- --cGCGGCGcccGGCGGCGGcaaUCUCCAuGCg -3'
miRNA:   3'- gauCGUCGU---CCGUUGUC---AGAGGU-CGa -5'
24603 3' -55 NC_005264.1 + 89522 0.72 0.639236
Target:  5'- -gAGCGGCAGGCggccuauugauuggcGcggGCAGUgUCCGGCg -3'
miRNA:   3'- gaUCGUCGUCCG---------------U---UGUCAgAGGUCGa -5'
24603 3' -55 NC_005264.1 + 159991 0.7 0.738142
Target:  5'- --cGCAGCGGGCGACGG-CgCgAGCg -3'
miRNA:   3'- gauCGUCGUCCGUUGUCaGaGgUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.