Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24603 | 5' | -64.5 | NC_005264.1 | + | 43323 | 0.66 | 0.55128 |
Target: 5'- aGGAGGGaGGAGCGgGGggaCCCcUUGCu- -3' miRNA: 3'- -CCUCCCcCCUCGCgCC---GGGuGACGuc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 30110 | 0.66 | 0.55128 |
Target: 5'- cGAGaugcGGGcGGCGCGGCaCCgaGCUGCGGc -3' miRNA: 3'- cCUCc---CCCcUCGCGCCG-GG--UGACGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 162350 | 0.66 | 0.55128 |
Target: 5'- aGGAGGGaGGAGCGgGGggaCCCcUUGCu- -3' miRNA: 3'- -CCUCCCcCCUCGCgCC---GGGuGACGuc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 42831 | 0.66 | 0.523244 |
Target: 5'- cGAGGGGGGA----GGCCCAcCUGCc- -3' miRNA: 3'- cCUCCCCCCUcgcgCCGGGU-GACGuc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 161857 | 0.66 | 0.523244 |
Target: 5'- cGAGGGGGGA----GGCCCAcCUGCc- -3' miRNA: 3'- cCUCCCCCCUcgcgCCGGGU-GACGuc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 98508 | 0.66 | 0.521394 |
Target: 5'- cGGAGGcgccgacGGGGGGCcucagucuuggcaGCGGCaacgCGCUGUGGg -3' miRNA: 3'- -CCUCC-------CCCCUCG-------------CGCCGg---GUGACGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 123532 | 0.66 | 0.514019 |
Target: 5'- cGGAGGGGGGAcUGgGcGUCCGCggagGgGGa -3' miRNA: 3'- -CCUCCCCCCUcGCgC-CGGGUGa---CgUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 4505 | 0.66 | 0.514019 |
Target: 5'- cGGAGGGGGGAcUGgGcGUCCGCggagGgGGa -3' miRNA: 3'- -CCUCCCCCCUcGCgC-CGGGUGa---CgUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 149586 | 0.66 | 0.5131 |
Target: 5'- cGGAGGGGGGcugcucgaugccgAGUcuuuGCGG-UCGCUGCGc -3' miRNA: 3'- -CCUCCCCCC-------------UCG----CGCCgGGUGACGUc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 149463 | 0.67 | 0.504861 |
Target: 5'- aGGAGgucucGGGGGAGcCGCGGgCCCcgGCU-CGGc -3' miRNA: 3'- -CCUC-----CCCCCUC-GCGCC-GGG--UGAcGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 30436 | 0.67 | 0.504861 |
Target: 5'- aGGAGgucucGGGGGAGcCGCGGgCCCcgGCU-CGGc -3' miRNA: 3'- -CCUC-----CCCCCUC-GCGCC-GGG--UGAcGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 22768 | 0.67 | 0.477827 |
Target: 5'- cGGcGGGcaaugaGGGGCGCGGCgaCACUGCu- -3' miRNA: 3'- -CCuCCCc-----CCUCGCGCCGg-GUGACGuc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 150209 | 0.68 | 0.437828 |
Target: 5'- cGGAGGgcgagcgagugggacGGGGGGCuGCGGCCCuc--CAGa -3' miRNA: 3'- -CCUCC---------------CCCCUCG-CGCCGGGugacGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 31182 | 0.68 | 0.437828 |
Target: 5'- cGGAGGgcgagcgagugggacGGGGGGCuGCGGCCCuc--CAGa -3' miRNA: 3'- -CCUCC---------------CCCCUCG-CGCCGGGugacGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 80610 | 0.68 | 0.423538 |
Target: 5'- -cGGGGGGGAGCGUucuugGGCCCcgaggacgauggacGC-GCGGc -3' miRNA: 3'- ccUCCCCCCUCGCG-----CCGGG--------------UGaCGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 35578 | 0.68 | 0.417735 |
Target: 5'- aGAGGGGGGAGCugcuGCGGCUUcggccgaugGCcGCGu -3' miRNA: 3'- cCUCCCCCCUCG----CGCCGGG---------UGaCGUc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 154605 | 0.68 | 0.417735 |
Target: 5'- aGAGGGGGGAGCugcuGCGGCUUcggccgaugGCcGCGu -3' miRNA: 3'- cCUCCCCCCUCG----CGCCGGG---------UGaCGUc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 121863 | 0.68 | 0.417735 |
Target: 5'- cGGAGGGccGGucGCGCucgcgccgucGCCCGCUGCGGc -3' miRNA: 3'- -CCUCCC--CCcuCGCGc---------CGGGUGACGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 2837 | 0.68 | 0.417735 |
Target: 5'- cGGAGGGccGGucGCGCucgcgccgucGCCCGCUGCGGc -3' miRNA: 3'- -CCUCCC--CCcuCGCGc---------CGGGUGACGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 120139 | 0.68 | 0.409531 |
Target: 5'- aGGAGGacGGAGCGcCGGCCgGCgaugaccgaGCAGa -3' miRNA: 3'- -CCUCCccCCUCGC-GCCGGgUGa--------CGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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