Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24603 | 5' | -64.5 | NC_005264.1 | + | 44115 | 0.68 | 0.401427 |
Target: 5'- gGGAGGGGGcGGGauaGCGGCgaUUACgaGCGGg -3' miRNA: 3'- -CCUCCCCC-CUCg--CGCCG--GGUGa-CGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 131604 | 0.69 | 0.377738 |
Target: 5'- uGAGGGGGGA-CaCGGCCCACauCAGc -3' miRNA: 3'- cCUCCCCCCUcGcGCCGGGUGacGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 12577 | 0.69 | 0.377738 |
Target: 5'- uGAGGGGGGA-CaCGGCCCACauCAGc -3' miRNA: 3'- cCUCCCCCCUcGcGCCGGGUGacGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 154109 | 0.69 | 0.361725 |
Target: 5'- aGGAacgGGGGGcGAGCcgaaacgGCGGCCaCGCgcgcGCAGa -3' miRNA: 3'- -CCU---CCCCC-CUCG-------CGCCGG-GUGa---CGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 136003 | 0.7 | 0.331844 |
Target: 5'- aGGAGagacuguuugucuGGGGGcucaagagcGGCGCGGCCCACUucuccucGUGGa -3' miRNA: 3'- -CCUC-------------CCCCC---------UCGCGCCGGGUGA-------CGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 160892 | 0.73 | 0.218342 |
Target: 5'- cGGGGGGGGGGGCaaCGGCCgCGCa-CAGa -3' miRNA: 3'- -CCUCCCCCCUCGc-GCCGG-GUGacGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 41866 | 0.73 | 0.218342 |
Target: 5'- cGGGGGGGGGGGCaaCGGCCgCGCa-CAGa -3' miRNA: 3'- -CCUCCCCCCUCGc-GCCGG-GUGacGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 43217 | 0.76 | 0.142453 |
Target: 5'- gGGGGGGGGGcuacGGCGgGGCUgGCggGCGGa -3' miRNA: 3'- -CCUCCCCCC----UCGCgCCGGgUGa-CGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 162244 | 0.76 | 0.142453 |
Target: 5'- gGGGGGGGGGcuacGGCGgGGCUgGCggGCGGa -3' miRNA: 3'- -CCUCCCCCC----UCGCgCCGGgUGa-CGUC- -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 162188 | 0.79 | 0.080455 |
Target: 5'- gGGAGGGGGGGGCGCGugaGCCUcuaucgcGCUGCc- -3' miRNA: 3'- -CCUCCCCCCUCGCGC---CGGG-------UGACGuc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 43161 | 0.79 | 0.080455 |
Target: 5'- gGGAGGGGGGGGCGCGugaGCCUcuaucgcGCUGCc- -3' miRNA: 3'- -CCUCCCCCCUCGCGC---CGGG-------UGACGuc -5' |
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24603 | 5' | -64.5 | NC_005264.1 | + | 55562 | 1.08 | 0.000609 |
Target: 5'- uGGAGGGGGGAGCGCGGCCCACUGCAGc -3' miRNA: 3'- -CCUCCCCCCUCGCGCCGGGUGACGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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