miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24603 5' -64.5 NC_005264.1 + 2837 0.68 0.417735
Target:  5'- cGGAGGGccGGucGCGCucgcgccgucGCCCGCUGCGGc -3'
miRNA:   3'- -CCUCCC--CCcuCGCGc---------CGGGUGACGUC- -5'
24603 5' -64.5 NC_005264.1 + 4505 0.66 0.514019
Target:  5'- cGGAGGGGGGAcUGgGcGUCCGCggagGgGGa -3'
miRNA:   3'- -CCUCCCCCCUcGCgC-CGGGUGa---CgUC- -5'
24603 5' -64.5 NC_005264.1 + 12577 0.69 0.377738
Target:  5'- uGAGGGGGGA-CaCGGCCCACauCAGc -3'
miRNA:   3'- cCUCCCCCCUcGcGCCGGGUGacGUC- -5'
24603 5' -64.5 NC_005264.1 + 22768 0.67 0.477827
Target:  5'- cGGcGGGcaaugaGGGGCGCGGCgaCACUGCu- -3'
miRNA:   3'- -CCuCCCc-----CCUCGCGCCGg-GUGACGuc -5'
24603 5' -64.5 NC_005264.1 + 30110 0.66 0.55128
Target:  5'- cGAGaugcGGGcGGCGCGGCaCCgaGCUGCGGc -3'
miRNA:   3'- cCUCc---CCCcUCGCGCCG-GG--UGACGUC- -5'
24603 5' -64.5 NC_005264.1 + 30436 0.67 0.504861
Target:  5'- aGGAGgucucGGGGGAGcCGCGGgCCCcgGCU-CGGc -3'
miRNA:   3'- -CCUC-----CCCCCUC-GCGCC-GGG--UGAcGUC- -5'
24603 5' -64.5 NC_005264.1 + 31182 0.68 0.437828
Target:  5'- cGGAGGgcgagcgagugggacGGGGGGCuGCGGCCCuc--CAGa -3'
miRNA:   3'- -CCUCC---------------CCCCUCG-CGCCGGGugacGUC- -5'
24603 5' -64.5 NC_005264.1 + 35578 0.68 0.417735
Target:  5'- aGAGGGGGGAGCugcuGCGGCUUcggccgaugGCcGCGu -3'
miRNA:   3'- cCUCCCCCCUCG----CGCCGGG---------UGaCGUc -5'
24603 5' -64.5 NC_005264.1 + 41866 0.73 0.218342
Target:  5'- cGGGGGGGGGGGCaaCGGCCgCGCa-CAGa -3'
miRNA:   3'- -CCUCCCCCCUCGc-GCCGG-GUGacGUC- -5'
24603 5' -64.5 NC_005264.1 + 42831 0.66 0.523244
Target:  5'- cGAGGGGGGA----GGCCCAcCUGCc- -3'
miRNA:   3'- cCUCCCCCCUcgcgCCGGGU-GACGuc -5'
24603 5' -64.5 NC_005264.1 + 43161 0.79 0.080455
Target:  5'- gGGAGGGGGGGGCGCGugaGCCUcuaucgcGCUGCc- -3'
miRNA:   3'- -CCUCCCCCCUCGCGC---CGGG-------UGACGuc -5'
24603 5' -64.5 NC_005264.1 + 43217 0.76 0.142453
Target:  5'- gGGGGGGGGGcuacGGCGgGGCUgGCggGCGGa -3'
miRNA:   3'- -CCUCCCCCC----UCGCgCCGGgUGa-CGUC- -5'
24603 5' -64.5 NC_005264.1 + 43323 0.66 0.55128
Target:  5'- aGGAGGGaGGAGCGgGGggaCCCcUUGCu- -3'
miRNA:   3'- -CCUCCCcCCUCGCgCC---GGGuGACGuc -5'
24603 5' -64.5 NC_005264.1 + 44115 0.68 0.401427
Target:  5'- gGGAGGGGGcGGGauaGCGGCgaUUACgaGCGGg -3'
miRNA:   3'- -CCUCCCCC-CUCg--CGCCG--GGUGa-CGUC- -5'
24603 5' -64.5 NC_005264.1 + 55562 1.08 0.000609
Target:  5'- uGGAGGGGGGAGCGCGGCCCACUGCAGc -3'
miRNA:   3'- -CCUCCCCCCUCGCGCCGGGUGACGUC- -5'
24603 5' -64.5 NC_005264.1 + 80610 0.68 0.423538
Target:  5'- -cGGGGGGGAGCGUucuugGGCCCcgaggacgauggacGC-GCGGc -3'
miRNA:   3'- ccUCCCCCCUCGCG-----CCGGG--------------UGaCGUC- -5'
24603 5' -64.5 NC_005264.1 + 98508 0.66 0.521394
Target:  5'- cGGAGGcgccgacGGGGGGCcucagucuuggcaGCGGCaacgCGCUGUGGg -3'
miRNA:   3'- -CCUCC-------CCCCUCG-------------CGCCGg---GUGACGUC- -5'
24603 5' -64.5 NC_005264.1 + 120139 0.68 0.409531
Target:  5'- aGGAGGacGGAGCGcCGGCCgGCgaugaccgaGCAGa -3'
miRNA:   3'- -CCUCCccCCUCGC-GCCGGgUGa--------CGUC- -5'
24603 5' -64.5 NC_005264.1 + 121863 0.68 0.417735
Target:  5'- cGGAGGGccGGucGCGCucgcgccgucGCCCGCUGCGGc -3'
miRNA:   3'- -CCUCCC--CCcuCGCGc---------CGGGUGACGUC- -5'
24603 5' -64.5 NC_005264.1 + 123532 0.66 0.514019
Target:  5'- cGGAGGGGGGAcUGgGcGUCCGCggagGgGGa -3'
miRNA:   3'- -CCUCCCCCCUcGCgC-CGGGUGa---CgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.