miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24606 3' -52.4 NC_005264.1 + 9851 0.66 0.987705
Target:  5'- aGGGuCAAGCGGccccuaucGGGCGCGGucccg-GCg -3'
miRNA:   3'- -CCC-GUUCGCC--------UCUGCGUCcuauuaCG- -5'
24606 3' -52.4 NC_005264.1 + 128877 0.66 0.987705
Target:  5'- aGGGuCAAGCGGccccuaucGGGCGCGGucccg-GCg -3'
miRNA:   3'- -CCC-GUUCGCC--------UCUGCGUCcuauuaCG- -5'
24606 3' -52.4 NC_005264.1 + 69818 0.66 0.987705
Target:  5'- cGGC--GCGGAcGACGCcgccGGGGUGAagGCc -3'
miRNA:   3'- cCCGuuCGCCU-CUGCG----UCCUAUUa-CG- -5'
24606 3' -52.4 NC_005264.1 + 25719 0.66 0.987705
Target:  5'- cGGGCGgcAGCGGugcguacucGGuCGCGGaGAggccagUGAUGCu -3'
miRNA:   3'- -CCCGU--UCGCC---------UCuGCGUC-CU------AUUACG- -5'
24606 3' -52.4 NC_005264.1 + 21896 0.66 0.987705
Target:  5'- aGGGUAuuCGGcGGCGCGugcGGucGUAGUGCu -3'
miRNA:   3'- -CCCGUucGCCuCUGCGU---CC--UAUUACG- -5'
24606 3' -52.4 NC_005264.1 + 33136 0.66 0.986758
Target:  5'- aGGaGCAuGCGGAuaaugGACGUgAGGAaguuuaacgaacgagUAGUGCg -3'
miRNA:   3'- -CC-CGUuCGCCU-----CUGCG-UCCU---------------AUUACG- -5'
24606 3' -52.4 NC_005264.1 + 31798 0.66 0.986096
Target:  5'- aGGGC-GGCGGucgccGcCGCAGGucGUGAcGCg -3'
miRNA:   3'- -CCCGuUCGCCu----CuGCGUCC--UAUUaCG- -5'
24606 3' -52.4 NC_005264.1 + 101115 0.66 0.986096
Target:  5'- uGGGCca-CGGAGGCgaccuguuGCAGGAauuUGCu -3'
miRNA:   3'- -CCCGuucGCCUCUG--------CGUCCUauuACG- -5'
24606 3' -52.4 NC_005264.1 + 150824 0.66 0.986096
Target:  5'- aGGGC-GGCGGucgccGcCGCAGGucGUGAcGCg -3'
miRNA:   3'- -CCCGuUCGCCu----CuGCGUCC--UAUUaCG- -5'
24606 3' -52.4 NC_005264.1 + 103574 0.66 0.986096
Target:  5'- uGGGUuuaCGGcGACGCu-GAUGAUGCu -3'
miRNA:   3'- -CCCGuucGCCuCUGCGucCUAUUACG- -5'
24606 3' -52.4 NC_005264.1 + 107411 0.66 0.985927
Target:  5'- uGGCAAGaaCGGAGaguuucucuugguGCGCuGGAcAAUGUg -3'
miRNA:   3'- cCCGUUC--GCCUC-------------UGCGuCCUaUUACG- -5'
24606 3' -52.4 NC_005264.1 + 83003 0.66 0.985056
Target:  5'- gGGGCGGGUucuguuGGAGGggcauguuucgucgcCGCAGGGgccucguUGCg -3'
miRNA:   3'- -CCCGUUCG------CCUCU---------------GCGUCCUauu----ACG- -5'
24606 3' -52.4 NC_005264.1 + 72289 0.66 0.98433
Target:  5'- cGGCAAcgaGGAGACGCGGugcGAUAAcacauucuuUGCc -3'
miRNA:   3'- cCCGUUcg-CCUCUGCGUC---CUAUU---------ACG- -5'
24606 3' -52.4 NC_005264.1 + 6734 0.66 0.98433
Target:  5'- cGGUAcuccGCGGcguGGCGCGGGA-AGUGUu -3'
miRNA:   3'- cCCGUu---CGCCu--CUGCGUCCUaUUACG- -5'
24606 3' -52.4 NC_005264.1 + 15408 0.66 0.98433
Target:  5'- uGGGUc-GCGGccGGCGUAGcGAUGAUGa -3'
miRNA:   3'- -CCCGuuCGCCu-CUGCGUC-CUAUUACg -5'
24606 3' -52.4 NC_005264.1 + 134963 0.66 0.983769
Target:  5'- uGGCcagacacgacaaaaAGGCGGcGGCGCAuugGGcgGAUGCc -3'
miRNA:   3'- cCCG--------------UUCGCCuCUGCGU---CCuaUUACG- -5'
24606 3' -52.4 NC_005264.1 + 144276 0.66 0.982996
Target:  5'- uGGGCcGGCGGAugccgcuccgacuGACGCcggcgcgcccucaggGGGAgAcgGCg -3'
miRNA:   3'- -CCCGuUCGCCU-------------CUGCG---------------UCCUaUuaCG- -5'
24606 3' -52.4 NC_005264.1 + 123482 0.66 0.982399
Target:  5'- cGGGCAuGCGGuGGCcgcgcgguuGCuGGGcGAUGUg -3'
miRNA:   3'- -CCCGUuCGCCuCUG---------CGuCCUaUUACG- -5'
24606 3' -52.4 NC_005264.1 + 92085 0.66 0.981157
Target:  5'- gGGGCGGGUcauGGAGGCGCAuuucgucgcUGCg -3'
miRNA:   3'- -CCCGUUCG---CCUCUGCGUccuauu---ACG- -5'
24606 3' -52.4 NC_005264.1 + 49617 0.66 0.980294
Target:  5'- gGGGCGcucGGUGGGGuAC-CAGGGggccaaGGUGCu -3'
miRNA:   3'- -CCCGU---UCGCCUC-UGcGUCCUa-----UUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.