miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24606 5' -61 NC_005264.1 + 105334 0.66 0.759366
Target:  5'- -aAUGAG-CUCUCGcCGCCgCGCGCg- -3'
miRNA:   3'- gcUGCUCaGGGAGCaGCGG-GCGCGag -5'
24606 5' -61 NC_005264.1 + 82918 0.66 0.759366
Target:  5'- aGugGAGUCCgCcgcagaCGUCgGCCaCGCGCa- -3'
miRNA:   3'- gCugCUCAGG-Ga-----GCAG-CGG-GCGCGag -5'
24606 5' -61 NC_005264.1 + 18935 0.66 0.750227
Target:  5'- gCGACGAgaaacGUCCCacaaUCGacgugCGCCCGcCGCg- -3'
miRNA:   3'- -GCUGCU-----CAGGG----AGCa----GCGGGC-GCGag -5'
24606 5' -61 NC_005264.1 + 94379 0.66 0.750227
Target:  5'- cCGACGAaguggugucGUCCCUCGUCuaugaucagGCCgCgGCGC-Cg -3'
miRNA:   3'- -GCUGCU---------CAGGGAGCAG---------CGG-G-CGCGaG- -5'
24606 5' -61 NC_005264.1 + 16881 0.66 0.750227
Target:  5'- gCGGCGGcaaacgauauGUCgCCgUCGUCggugaggcccauGCCCGCGCUg -3'
miRNA:   3'- -GCUGCU----------CAG-GG-AGCAG------------CGGGCGCGAg -5'
24606 5' -61 NC_005264.1 + 106151 0.66 0.740994
Target:  5'- gCGGCGAG-CCUUaccgaacaccUGUgGCCCGCGUa- -3'
miRNA:   3'- -GCUGCUCaGGGA----------GCAgCGGGCGCGag -5'
24606 5' -61 NC_005264.1 + 34239 0.66 0.735412
Target:  5'- gGACGGGUUucgucccgCCUCGUgCGCgcgguaauccgcgugCUGCGCUCc -3'
miRNA:   3'- gCUGCUCAG--------GGAGCA-GCG---------------GGCGCGAG- -5'
24606 5' -61 NC_005264.1 + 149481 0.66 0.722277
Target:  5'- aGACGAGUCgCUCGagcCGCUcgauuCGCGC-Cg -3'
miRNA:   3'- gCUGCUCAGgGAGCa--GCGG-----GCGCGaG- -5'
24606 5' -61 NC_005264.1 + 100842 0.66 0.712808
Target:  5'- aCGGCGAGuucUCCCUCGaCGCaugggaccaggCGCGCg- -3'
miRNA:   3'- -GCUGCUC---AGGGAGCaGCGg----------GCGCGag -5'
24606 5' -61 NC_005264.1 + 154745 0.66 0.712808
Target:  5'- gGACGcuucguuGUCCCUguuuaCGcCGCCCGUGCcCg -3'
miRNA:   3'- gCUGCu------CAGGGA-----GCaGCGGGCGCGaG- -5'
24606 5' -61 NC_005264.1 + 35719 0.66 0.712808
Target:  5'- gGACGcuucguuGUCCCUguuuaCGcCGCCCGUGCcCg -3'
miRNA:   3'- gCUGCu------CAGGGA-----GCaGCGGGCGCGaG- -5'
24606 5' -61 NC_005264.1 + 9526 0.66 0.709956
Target:  5'- uCGAgGGGcCCucgaacuuacucuuCgacgCGUCGCCCGCGcCUCg -3'
miRNA:   3'- -GCUgCUCaGG--------------Ga---GCAGCGGGCGC-GAG- -5'
24606 5' -61 NC_005264.1 + 128553 0.66 0.709956
Target:  5'- uCGAgGGGcCCucgaacuuacucuuCgacgCGUCGCCCGCGcCUCg -3'
miRNA:   3'- -GCUgCUCaGG--------------Ga---GCAGCGGGCGC-GAG- -5'
24606 5' -61 NC_005264.1 + 83374 0.67 0.704234
Target:  5'- -uACGAGgaagaagcccagcugCCgCUCGUCGUCUGCGCg- -3'
miRNA:   3'- gcUGCUCa--------------GG-GAGCAGCGGGCGCGag -5'
24606 5' -61 NC_005264.1 + 122525 0.67 0.693693
Target:  5'- gCGGCGGGgggcaggggaUCCUCGcCGUCCGC-CUCg -3'
miRNA:   3'- -GCUGCUCa---------GGGAGCaGCGGGCGcGAG- -5'
24606 5' -61 NC_005264.1 + 3498 0.67 0.693693
Target:  5'- gCGGCGGGgggcaggggaUCCUCGcCGUCCGC-CUCg -3'
miRNA:   3'- -GCUGCUCa---------GGGAGCaGCGGGCGcGAG- -5'
24606 5' -61 NC_005264.1 + 107718 0.67 0.684061
Target:  5'- aCGGCGGGgugucgaaCCCUCGUgGCuuGgGCa- -3'
miRNA:   3'- -GCUGCUCa-------GGGAGCAgCGggCgCGag -5'
24606 5' -61 NC_005264.1 + 93095 0.67 0.673422
Target:  5'- gGGCcAGUUCUgagaaguUCGgUGCCCGCGCUCc -3'
miRNA:   3'- gCUGcUCAGGG-------AGCaGCGGGCGCGAG- -5'
24606 5' -61 NC_005264.1 + 88947 0.67 0.664689
Target:  5'- uCGACGucUUUCUCGUCGCgCGCauagcacaGCUCg -3'
miRNA:   3'- -GCUGCucAGGGAGCAGCGgGCG--------CGAG- -5'
24606 5' -61 NC_005264.1 + 19848 0.67 0.664689
Target:  5'- -uGCGGGUCCCca--CGCCCGC-CUCa -3'
miRNA:   3'- gcUGCUCAGGGagcaGCGGGCGcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.