miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24608 3' -53.2 NC_005264.1 + 119497 0.66 0.973708
Target:  5'- aUGUGGCugcGCAGGGCGUGcucCGagGCGGc -3'
miRNA:   3'- gACACCG---CGUCUUGCACu--GCa-UGCUa -5'
24608 3' -53.2 NC_005264.1 + 80206 0.66 0.973708
Target:  5'- ---aGGCGCGGGACGUG-UGUGaGAa -3'
miRNA:   3'- gacaCCGCGUCUUGCACuGCAUgCUa -5'
24608 3' -53.2 NC_005264.1 + 88545 0.66 0.970896
Target:  5'- aCUGUGGCGCcgcagguacgAGAuCGcGGCGaACGAg -3'
miRNA:   3'- -GACACCGCG----------UCUuGCaCUGCaUGCUa -5'
24608 3' -53.2 NC_005264.1 + 94414 0.66 0.970603
Target:  5'- ---cGGCGCGGAcuGCGcgaucgcUGACGUGgGAUg -3'
miRNA:   3'- gacaCCGCGUCU--UGC-------ACUGCAUgCUA- -5'
24608 3' -53.2 NC_005264.1 + 36813 0.67 0.957491
Target:  5'- uCUGcGGCGCAG-GCGaGGCGcgGCGAa -3'
miRNA:   3'- -GACaCCGCGUCuUGCaCUGCa-UGCUa -5'
24608 3' -53.2 NC_005264.1 + 133066 0.68 0.940381
Target:  5'- -cGUGGCGUGcgagccgcGAGCGagcUGugGUGCGAg -3'
miRNA:   3'- gaCACCGCGU--------CUUGC---ACugCAUGCUa -5'
24608 3' -53.2 NC_005264.1 + 87650 0.68 0.930364
Target:  5'- gUGgGGCGCGGGACcUGGCGgcaACGGg -3'
miRNA:   3'- gACaCCGCGUCUUGcACUGCa--UGCUa -5'
24608 3' -53.2 NC_005264.1 + 93448 0.68 0.919358
Target:  5'- uUGUGGCGCAGGugGUcGCc-GCGGa -3'
miRNA:   3'- gACACCGCGUCUugCAcUGcaUGCUa -5'
24608 3' -53.2 NC_005264.1 + 139863 0.69 0.901001
Target:  5'- aUGUGGCaCGGGGCGa-ACGUACGGUc -3'
miRNA:   3'- gACACCGcGUCUUGCacUGCAUGCUA- -5'
24608 3' -53.2 NC_005264.1 + 65021 0.7 0.865645
Target:  5'- -aGUaGGUGCGGAGauCGUGACGUAUGu- -3'
miRNA:   3'- gaCA-CCGCGUCUU--GCACUGCAUGCua -5'
24608 3' -53.2 NC_005264.1 + 28275 0.7 0.853149
Target:  5'- uUGuUGGCGCAGGuCGUGACGggguacuuggccuucUGCGGg -3'
miRNA:   3'- gAC-ACCGCGUCUuGCACUGC---------------AUGCUa -5'
24608 3' -53.2 NC_005264.1 + 15758 0.71 0.833418
Target:  5'- aUGUGuGCGCGcGAGCGUGGCuccggGCGAg -3'
miRNA:   3'- gACAC-CGCGU-CUUGCACUGca---UGCUa -5'
24608 3' -53.2 NC_005264.1 + 76528 0.71 0.816137
Target:  5'- aCUG-GGCcuGCGaucucgaguGAGCGUGACGUGCGGa -3'
miRNA:   3'- -GACaCCG--CGU---------CUUGCACUGCAUGCUa -5'
24608 3' -53.2 NC_005264.1 + 59914 1.06 0.009193
Target:  5'- cCUGUGGCGCAGAACGUGACGUACGAUc -3'
miRNA:   3'- -GACACCGCGUCUUGCACUGCAUGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.